Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2025
Forfattere
Martin Nopens Imke Greving Silja Flenner Linnea Hesse Jan Lüdtke Michael Altgen Gerald Koch Johannes Beruda Sabrina Heldner Hannes Köhm Sergej Kaschuro Andrea Olbrich Jakob Benedikt Mietner Fabian Scheckenbach Jördis Sieburg-Rockel Andreas KrauseSammendrag
Deep understanding of the structural composition and growth of biological specimens is becoming increasingly important for the development of bio-based and sustainable material systems. Full-field nano-computed tomography is particularly suitable for this purpose as it allows for non-destructive 3D imaging at high spatial resolution. However, most biological samples are functionalized by water and respond sensitively to any changes in climate conditions, specifically relative humidity, by adjusting their material moisture content. To date, only a limited number of tomography instruments offer an in situ climate control option to users. These, however, are limited either by the range of relative humidity states, the long times required to change the climate state, or obstruction or attenuation of the beam. Here, the first fully automatized climate cell for in situ full-field nanotomography is presented. It has been designed, built and integrated at the nanotomography station at the P05 imaging beamline, operated by Hereon at the DESY storage ring PETRA III, Germany. The highly flexible and windowless design allows the humidity dependent swelling and shrinking of lignified plant cell walls to be studied in situ, using phase contrast nanotomography. The concept of this climate chamber can easily be integrated into other setups. It operates in the relative humidity range of 0–90% and can be controlled in a temperature range of 10–50°C. Climate conditions can be adjusted at any time, remotely from the control hutch by using a humidity generator. Results show that the developed setup maintains a stable climate during the entire duration of a tomographic scan at different humidities and does not obstruct the sample or hinder the imaging conditions. During the tomographic investigation the sample remains stable in the flow of the air stream and shows typical cell wall swelling and shrinking behaviour depending on the equilibrium moisture content. This new climate cell is now available to all users of the P05 nanotomography instrument for conditioning samples, serving a wide range of scientific applications.
Forfattere
Pia Marinček Jing Vir Leong Loic Pittet Ètienne Léveillé-Bourret Tommi Nyman Maria Tomoshevich Evgeny Banaev Li He Elvira Hörandl Martin Volf Natascha D. WagnerSammendrag
The spatio-temporal evolution of woody plant lineages in the Holarctic is still understudied, limiting our understanding of evolutionary processes that promote higher diversity at higher latitudes in some lineages, which contradicts the latitudinal gradient hypothesis which predicts higher species richness in the tropics. Shrub willows (Salix subgenus Vetrix) comprise about 350 species of which many are adapted to arctic-alpine ecosystems and thus form an important element across the Holarctic region. In this study, we utilized RAD sequencing to estimate the spatio-temporal evolution of the Vetrix clade based on about 140 species covering most of its morphological and geographical diversity. The resolved phylogeny revealed four lineages: the Pan-Himalayan clade, the North American clade and two clades containing species from Eurasia. Widespread circumpolar species form a hybridogenetic grade between the Eurasian and North American clades. Our results confirm that shrub willows originated in the Tertiary, probably in Asia, and that diversification coincided with the climatic cooling in the Pleistocene. At least two radiations were observed, in the Pan Himalayas and in North America. Speciation was further shaped by migration and dispersal in Eurasia, likely accelerated by the uplift of mountain chains, the closure of the Turgai Strait and expansion of suitable habitats. The dated phylogeny revealed that speciation of arctic lineages predates adaptation to high latitudes, as also evident from the fossil record. Small wind-dispersed seeds enabled shrub willows to colonize the expanding arctic tundra regions in the Miocene and their recolonization after the LGM. Given the high observed number of polyploid species equally distributed in all clades and indications of genetic admixture, we assume that species diversity in shrub willows was additionally increased by hybridization and polyploidization.
Forfattere
Alejandro Sánchez-Gómez Katrin Bieger Christoph Schürz José Manuel Rodríguez-Castellanos Eugenio Molina-NavarroSammendrag
Calibration is essential to ensure hydrological models’ reliability. While performance metrics for simulated variables are often used as the primary indicators of model adequacy, it is equally important to verify that the underlying hydrological processes are realistically represented. This consideration becomes even more critical in complex basins characterized by heterogeneous climatic or geological conditions, where processes variability may necessitate the use of zonal calibration approaches. This study presents a multi-spatial and multi-criteria calibration of a SWAT+ model for the Upper Tagus River basin, a large and geologically diverse catchment. This approach, which includes a sensitivity analysis, has been designed to ensure a realistic simulation of hydrological processes in geologically diverse areas. The daily streamflow simulation performance and its components have been evaluated at 22 gauged areas, as inflows to 12 reservoirs, collectively covering 44 % of the modelled area (all under natural flow regimes). The optimization of the model required a detailed zonation based on geological properties, and a comprehensive validation process, including a fine-tuning, was necessary to obtain a set of parameters resulting in an accurate (considering performance metrics) and realistic (considering the streamflow components) simulation in most of the areas evaluated. The global performance (evaluated aggregating streamflow of the different areas considered) demonstrated a very good daily streamflow simulation performance (NSE > 0.8, PBIAS < 5 %) and an accurate simulation of the daily streamflow components. The developed calibration approach, coded in R, can be effectively applied to other hydrologically complex regions.
Forfattere
Anne-Grete Roer HjelkremSammendrag
Det er ikke registrert sammendrag
Forfattere
Samuel L. Zelinka Samuel V. Glass Natalia Farkas Emil E. Thybring Michael Altgen Lauri Rautkari Simon Curling Jinzhen Cao Yujiao Wang Tina Künniger Gustav Nyström Christopher Hubert Dreimol Ingo Burgert Mark G. Roper Darren P. Broom Matthew Schwarzkopf Arief Yudhanto Mohammad Subah Gilles Lubineau Maria Fredriksson Wiesław Olek Jerzy Majka Nanna Bjerregaard Pedersen Daniel J. Burnett Armando R. Garcia Frieder Dreisbach Louis Waguespack Jennifer Schott Luis G. Esteban Alberto García‑Iruela Thibaut Colinart Romain Rémond Brahim Mazian Patrick Perré Lukas EmmerichSammendrag
Many studies that use an automated sorption balance to determine a water vapor sorption isotherm for wood collect data until the moisture content change is less than or equal to 0.002% min −1 (20 µg g −1 min −1 ). This stop criterion has been claimed to give errors in equilibrium moisture content (EMC) predictions of less than 0.001 g g −1 but over the past 10 years, studies have shown that the actual errors can be greater than 0.01 g g −1 because the measurements are stopped well before equilibrium is reached. Despite the large errors associated with this stop criterion, it remains popular due to the speed at which isotherms can be measured. This paper utilizes data from a worldwide interlaboratory study on automated sorption balances to develop a correction method for estimating EMC of western larch ( Larix occidentalis Nutt.) from the moisture content corresponding to the 20 µg g −1 min −1 criterion. The study uses data from 72 relative humidity absorption steps with hold times of 7–10 days from 21 different laboratories and eight different instrument models. EMC is defined based on the inherent mass stability of automated sorption balances determined in the first part of this interlaboratory study. On average the sorption process is less than 80% complete when the 20 µg g −1 min −1 criterion is reached, resulting in a mean absolute error (MAE) of 0.006 g g −1 . The correction equation for estimating EMC reduces the MAE to 0.001 g g −1 . The analysis presented in this paper, along with the correction equation, can be considered for certain use cases to reduce systematic errors and shorten measurement times.
Forfattere
Alexey Mikaberidze C. D. Cruz Ayalsew Zerihun Abel Barreto Pieter Simon A Beck Rocío Calderón Carlos Camino Rebecca E. Campbell Stephanie K.L. Delalieux Frédéric Fabre Elin Falla Stuart Fraser Kaitlin M. Gold Carlos Gongora-Canul Frédéric Hamelin Dalphy Ondine Camira Harteveld Cheng Fang Hong Melen Leclerc Da Young Lee Murillo Lobo Anne Katrin Mahlein Emily McLay Paul Melloy Stephen Parnell Uwe Rascher Jack Rich Irene Salotti Samuel Soubeyrand Susan Sprague Antony Surano Sandhya D. Takooree Thomas H. Taylor Suzanne Touzeau Pablo J. Zarco-Tejada Nik J. CunniffeSammendrag
Plant diseases impair the yield and quality of crops and threaten the health of natural plant communities. Epidemiological models can predict diseaseand inform management. However, data are scarce, because traditional methods to measure plant diseases are resource intensive, which often limitsmodel performance. Optical sensing offers a methodology to acquire detailed data on plant diseases across various spatial and temporal scales. Keytechnologies include multispectral, hyperspectral, and thermal imaging, as well as light detection and ranging; the associated sensors can be installedon ground-based platforms, uncrewed aerial vehicles, airplanes, and satellites. However, despite enormous potential for synergy, optical sensing andepidemiological modeling have rarely been integrated. To address this gap, we first review the state of the art to develop a common language accessibleto both research communities. We then explore the opportunities and challenges in combining optical sensing with epidemiological modeling. Wediscuss how optical sensing can inform epidemiological modeling by improving model selection and parameterization and providing accurate maps ofhost plants. Epidemiological modeling can inform optical sensing by boosting measurement accuracy, improving data interpretation, and optimizingsensor deployment. We consider outstanding challenges in (A) identifying particular diseases; (B) data availability, quality, and resolution; (C) linkingoptical sensing and epidemiological modeling; and (D) emerging diseases. We conclude with recommendations to motivate and shape research andpractice in both fields. Among other suggestions, we propose standardizing methods and protocols for optical sensing of plant health and developingopen access databases including both optical sensing data and epidemiological models to foster cross-disciplinary work.
Forfattere
Ludmila Sromek Kevin P. Johnson Mervi Kunnasranta Aqqalu Rosing-Asvid Britt-Marie Bäcklin Aselle Tasmagambetova Adylkhan Tovassarov Olga Rusinek Heather L. Ziel Ana Rubio-García Tommi NymanSammendrag
We studied the drivers of population-genetic structuring and genetic diversity in specialist parasites based on whole-genome resequencing data from 82 Echinophthirius horridus seal louse individuals sampled from 12 ecologically and behaviourally different phocine seal species, subspecies and populations across the Holarctic. We found that the main genetic disjunctions in E. horridus lice occur across seal host species and subspecies, with a further level of population subdivision emerging among host individuals within some populations. Endemic and relict landlocked seal (sub)species host the genetically most distinct louse populations, while lice associated with sympatric marine seals show signatures of occasional gene flow across hosts. Within the latter, the most extreme case is seen in the near-panmictic lice associated with northern European grey and harbour seals, which aggregate in shared rookeries and colonies. Although the louse and seal phylogenies were overall statistically significantly congruent, evidence for similar host shifts in the past is reflected in several conflicts in the phylogenetic trees of the lice and their hosts. Population-level mean heterozygosity and theta in seal lice varied considerably, and both measures of genetic variation were statistically significantly related to host population size. Taken together, our results support a non-adaptive model of parasite diversification, in which geographic and behavioural isolation among hosts drives parasite genetic differentiation, and genetic erosion in bottlenecked hosts cascades up to their specialist parasites. Our results provide new insights into processes that generate parasite diversity and trigger parallel losses of genetic diversity in endangered host–parasite systems.
Forfattere
Vincent Biard Piia Mutka Mairi Young Marja Niemi Tommi Nyman Milaja Nykänen Mervi KunnasrantaSammendrag
While social network analysis was originally developed for human sociology studies, it is also a valuable tool for characterizing behavioural aspects in many animal populations. For instance, social network analysis can be used for assessing the transmission of diseases or information within groups. Here, we describe co-occurrences and potential social associations of ringed seals, Pusa hispida saimensis, in Lake Saimaa, Finland, from 2016 to 2022, based on photoidentification data. Throughout seven successive moulting seasons (April to June), we identified 425 individuals, of which 178 had pairwise co-occurrences in altogether 185 dyads. These seals had a variable number of associates (up to 10), and co-occurrences were observed in 1–7 years. In general, observations of pairs or larger groups of seals (up to five individuals) were rare, and mainly occurred in the two most densely populated basins of the lake. Most of the group observations occurred on ice rather than on rocks. Overall, the fragmented nature of the lake system, site fidelity and moulting habitat availability are key factors that probably affect the observed co-occurrences. Most of the dyads were observed during only one year, which may indicate social tolerance while using the same moulting site. However, 21 dyads were observed during multiple moulting seasons, with some at different sites separated by up to 3 km in different years, suggesting the existence of actual long-lasting associations. Our study represents the first description of co-occurrences and potential social associations in the endangered Saimaa ringed seal. These results can be used for designing and implementing mitigation strategies in case of unforeseen and sudden changes in the environment, such as a disease outbreak.
Forfattere
Maxime Eeraerts Julia Osterman Péter Batáry Alexandra Maria Klein Matthias Albrecht Georg K.S. Andersson András Báldi Olivia M. Bernauer Leah Blechschmidt Eleanor J. Blitzer Paulo A.V. Borges Jordi Bosch Katherine L.W. Burns Alistair J. Campbell Sílvia Castro James M. Cook Robin Daelemans Bryan N. Danforth Arjen G. de Groot Kinley Dorji Rita Földesi Hannah R. Gaines Day Daniel García Lucas A. Garibaldi Michael P.D. Garratt Andrew Gonzalez Heather Grab Claudio Gratton Maren Kristine Koffeld Halvorsen Peter A. Hambäck Bjørn Arild Hatteland Olivier Honnay Eva Hulsmans Sandra Kaasen Vestheim David Kleijn Anikó Kovács-Hostyánszki Martin J. Lechowicz Nicolas Leclercq Yunhui Liu João Loureiro Rachel E. Mallinger Leon Marshall Ivan Meeus Marcos Miñarro Diego N. Nabaes Jodar Adara Pardo Mia G. Park Robert J. Paxton Néstor Pérez-Méndez Rafael A. Pincante De Carvalho Paavo Pirttilehto Matti Pisman Simon G. Potts Nigel E. Raine James R. Reilly Laura Roquer-Beni Ulrika Samnegård Dara A. Stanley Louis Sutter Kyle Teixeira-Martins Simon M. Tierney Ruan Veldtman Nicolas J. Vereecken Felix Wäckers Timothy Weekers Julianna K. Wilson Panlong Wu Kris VerheyenSammendrag
1. Apple is one of the most important pollinator-dependent fruit crops worldwide. To secure high-quality yields, it is crucial to know which, and to what extent, pollinating insects contribute to its pollination success as measured by fruit set, fruit weight and seed set. 2. We perform a meta-analysis of field studies conducted across multiple orchards on insect-mediated pollination in apple cultivation, using raw data from 29 studies, totalling 532 orchard replicates. We assessed the extent of pollen limitation on different pollination outcomes and assessed the contribution of honeybees, wild bees and bee species richness to apple pollination. 3. Across all studies, we detected strong evidence of pollen limitation for fruit set and seed set, but not for fruit weight. Honeybees were the most abundant flower visitors (average relative visitation of 71.9%) compared to wild bees; but when correcting for their pollination efficiency, the relative pollination contribution of honeybees was lower compared to their relative visitation (vice versa for solitary bees). 4. We conclude that honeybee visitation rate did not influence fruit or seed set; yet increasing honeybee visitation had a small, negative effect on fruit weight. Fruit set was not influenced by wild bee visitation rate, whereas wild bee visitation had a small, but clear positive effect on fruit weight and seed set. Bee species richness had a small, positive effect on seed set; whereas it did not affect fruit set and fruit weight. 5. Syntheses and applications. Our study highlights that pollen limitation is common in this global crop. While managed honeybees are dominant pollinators, a diverse community of wild bees contributes significantly to apple pollination and high-quality yield. The positive effect of wild bees and species richness on fruit weight and seed set demonstrates that wild bee pollination results in better-quality fruit production (increased weight & seed set). Therefore, our synthesis highlights the importance of conserving pollinator diversity to maintain pollination services. The absence of a clear effect of honeybee visitation rate on fruit and seed set, coupled with its negative impact on fruit weight, suggests a need for further optimisation of honeybee management to improve the cost-efficiency of pollination management.
Sammendrag
Recycling nutrients and organic matter available as waste in urban areas may close nutrient gaps and improve soil quality, but the concentrations of potentially toxic elements (PTEs) are commonly higher than in mineral fertilisers. How quickly may the limits for soil quality be exceeded, and for which elements, if such materials are applied intensively? For a rough answer to this question, we used soil data from ten case farms near Oslo and Bergen (Norway) to estimate how PTE concentrations increased when the demand for nitrogen (N), phosphorus (P) and potassium (K) in a theoretical carrot crop produced every year was covered by compost or digestate from source-separated food waste, or composted garden waste, compared with manure from horses and poultry which are often kept in peri-urban areas. With the intensive fertilisation assumed here, the Norwegian soil quality limits for PTEs were reached within 20–85 years, and faster for soil with more organic matter since regulatory limits set by weight discriminate soils with low bulk density. The limits were reached frst for Cu and Zn, which are both essential micronutrients for crop plants. The concentrations of macronutrients in the urban waste-based fertilisers were not well balanced. Rates covering the K demand would lead to high surpluses of P and N. In peri-urban vegetable growing, high applications of compost are not unusual, but more balanced fertilisation is required. The Norwegian regulations for PTEs in organic soil amendments and agricultural soil are stricter than in the EU, and do not support recycling of organic matter and nutrients from urban waste. Many materials which can only be applied with restricted amounts to Norwegian agricultural soil, may be applied according to crop demand in the EU. Growers utilising urban waste-based fertilisers intensively should monitor the soil regularly, including PTE analyses. Soil sampling should occur on fxed sampling points to reveal changes in concentrations over time. Norwegian authorities should consider a revision of the organic fertiliser regulation to support recycling of valuable organic materials. There is a need for more data on the PTE concentrations in agricultural soil and organic fertiliser materials