Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2020
Forfattere
Elisabet Martínez-Sancho Lenka Slámová Sandro Morganti Claudio Grefen Barbara Carvalho Benjamin Dauphin Christian Rellstab Felix Gugerli Lars Opgenoorth Katrin Heer Florian Knutzen Georg von Arx Fernando Valladares Stephen Cavers Bruno Fady Ricardo Alía Filippos Aravanopoulos Camilla Avanzi Francesca Bagnoli Evangelos Barbas Catherine Bastien Raquel Benavides Frédéric Bernier Guillaume Bodineau Cristina C. Bastias Jean-paul Charpentier José M. Climent Marianne Corréard Florence Courdier Darius Danusevičius Anna-Maria Farsakoglou José M. García del Barrio Olivier Gilg Santiago C. González-Martínez Alan Gray Christoph Hartleitner Agathe Hurel Arnaud Jouineau Katri Kärkkäinen Sonja T. Kujala Mariaceleste Labriola Martin Lascoux Marlène Lefebvre Vincent Lejeune Grégoire Le-Provost Mirko Liesebach Ermioni Malliarou Nicolas Mariotte Tor Myking Mari Mette TollefsrudSammendrag
Det er ikke registrert sammendrag
Forfattere
Baiba Krivmane Ilze Šņepste Vilnis Šķipars Igor A. Yakovlev Carl Gunnar Fossdal Adam Vivian-Smith Dainis RuņģisSammendrag
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Forfattere
Øyvind Aaberg Garmo Vegar Bakkestuen Sverre Solberg Volkmar Timmermann David Simpson Ane Vollsnes Per Arild Aarrestad Sissel Brit RanneklevSammendrag
Prosjektleder Øyvind Garmo
Forfattere
Håvard Eikemo Anette Sundbye Belachew Asalf Tadesse Magnhild Sekse Erdal Andrea Ficke Gunnhild Jaastad Annette Folkedal Schjøll Arne Stensvand Venche Talgø Nina Trandem Inger Sundheim FløistadSammendrag
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Forfattere
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenSammendrag
The lumpfish Cyclopterus lumpus is commercially exploited in numerous areas of its range in the North Atlantic Ocean, and is important in salmonid aquaculture as a biological agent for controlling sea lice. Despite the economic importance, few genetic resources for downstream applications, such as linkage mapping, parentage analysis, marker-assisted selection (MAS), quantitative trait loci (QTL) analysis, and assessing adaptive genetic diversity are currently available for the species. Here, we identify both genome- and transcriptome-derived microsatellites loci from C. lumpus to facilitate such applications. Across 2,346 genomic contigs, we detected a total of 3,067 microsatellite loci, of which 723 were the most suitable ones for primer design. From 116,555 transcriptomic unigenes, we identified a total of 231,556 microsatellite loci, which may indicate a high coverage of the available STRs. Out of these, primer pairs could only be designed for 6,203 loci. Dinucleotide repeats accounted for 89 percent and 52 percent of the genome- and transcriptome-derived microsatellites, respectively. The genetic composition of the dominant repeat motif types showed differences from other investigated fish species. In the genome-derived microsatellites AC/GT (67.8 percent), followed by AG/CT (15.1 percent) and AT/AT (5.6 percent) were the major motifs. Transcriptome-derived microsatellites showed also most dominantly the AC/GT repeat motif (33 percent), followed by A/T (26.6 percent) and AG/CT (11 percent). Functional annotation of microsatellite-containing transcriptomic sequences showed that the majority of the expressed sequence tags encode proteins involved in cellular and metabolic processes, binding activity and catalytic reactions. Importantly, STRs linked to genes involved in immune system process, growth, locomotion and reproduction were discovered in the present study. The extensive genomic marker information reported here will facilitate molecular ecology studies, conservation initiatives and will benefit many aspects of the breeding programmes of C. lumpus.
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2019
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