Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2024
Sammendrag
Det er ikke registrert sammendrag
Sammendrag
Microbial source tracking (MST) has been recognised as an effective tool for determining the origins and sources of faecal contamination in various terrestrial and aquatic ecosystems. Thus, it has been widely applied in environmental DNA (eDNA) surveys to define specific animal- and human-associated faecal eDNA. In this context, identification of and differentiation between anthropogenic and zoogenic faecal pollution origins and sources are pivotal for the evaluation of waterborne microbial contamination transport and the associated human, animal, and environmental health risks. These concerns are particularly pertinent to diverse nature-based solutions (NBS) that are being applied specifically to secure water safety and human and ecosystem well-being, for example, constructed wetlands (CWs) for water and wastewater treatment. The research in this area has undergone a constant evolution, and there is a solid foundation of publications available across the world. Hence, there is an early opportunity to synthesise valuable information and relevant knowledge on this specific topic, which will greatly benefit future work by improving NBS design and performance. By selecting 15 representative research reports published over 20 years, we review the current state of MST technology applied for faecal-associated contamination measures in NBS/CWs throughout the world.
2023
Sammendrag
Det er ikke registrert sammendrag
Forfattere
Iulia E. Neblea Anita-L. Chiriac Anamaria Zaharia Andrei Sarbu Mircea Teodorescu Andreea Miron Lisa Paruch Adam Paruch Andreea G. Olaru Tanta-V. IordacheSammendrag
The present work aims to study the influence of ammonium-quaternary monomers and chitosan, obtained from different sources, upon the effect of semi-interpenetrating polymer network (semi-IPN) hydrogels upon the removal of waterborne pathogens and bacteria from wastewater. To this end, the study was focused on using vinyl benzyl trimethylammonium chloride (VBTAC), a water-soluble monomer with known antibacterial properties, and mineral-enriched chitosan extracted from shrimp shells, to prepare the semi-IPNs. By using chitosan, which still contains the native minerals (mainly calcium carbonate), the study intends to justify that the stability and efficiency of the semi-IPN bactericidal devices can be modified and better improved. The new semi-IPNs were characterized for composition, thermal stability and morphology using well-known methods. Swelling degree (SD%) and the bactericidal effect assessed using molecular methods revealed that hydrogels made of chitosan derived from shrimp shell demonstrated the most competitive and promising potential for wastewater (WW) treatment.
Forfattere
Lisa Paruch Adam Paruch Iulia Elena Neblea Tanta-Verona Iordache Andreea Gabriela Olaru Anita-Laura Chiriac Andrei SarbuSammendrag
Wastewater (WW) has been identified as a major hotspot of microbial emerging contaminants (MECs), such as antibiotic resistant bacteria (ARB) and antibiotic resistance genes (ARGs). Currently used WW treatment methods cannot efficiently eliminate these pollutants, resulting in passive contamination of adjacent environments receiving undertreated discharge. More effective WW treatment strategies are therefore urgently required. In this study, newly developed and well-characterised semi-interpenetrating polymer network (semi-IPN) hydrogels derived from the valorisation of marine wastes (e.g., shrimp shells) were investigated for their ARG removal potential. The results indicated that multiple ARGs prevalent in WW, such as ermB, qrnS, sul1 and tetO, were removed by up to 100% after being treated by novel hydrogels. In terms of horizontal gene transfer-associated genetic elements, such as integron-1 intl1, transposons tnpA1 (IS4 group) and tnpA2 (IS6 group), substantial reduction approaching 99.9% was also achieved. Moreover, up to 97% of efflux pump-associated qacE∆1 conferring multidrug resistance (MR) was successfully attenuated. To conclude, the semi-INP hydrogels developed exhibited great potential for ARG mitigation towards strengthening WW decontamination, which provides a viable, cost-effective and environmentally friendly novel treatment approach.
2022
Sammendrag
Fecal contamination of water constitutes a serious health risk to humans and environmental ecosystems. This is mainly due to the fact that fecal material carries a variety of enteropathogens, which can enter and circulate in water bodies through fecal pollution. In this respect, the prompt identification of the polluting source(s) is pivotal to guiding appropriate target-specific remediation actions. Notably, microbial source tracking (MST) is widely applied to determine the host origin(s) contributing to fecal water pollution through the identification of zoogenic and/or anthropogenic sources of fecal environmental DNA (eDNA). A wide array of host-associated molecular markers have been developed and exploited for polluting source attribution in various aquatic ecosystems. This review is intended to provide the most up-to-date overview of genetic marker-based MST studies carried out in different water types, such as freshwaters (including surface and groundwaters) and seawaters (from coasts, beaches, lagoons, and estuaries), as well as drinking water systems. Focusing on the latest scientific progress/achievements, this work aims to gain updated knowledge on the applicability and robustness of using MST for water quality surveillance. Moreover, it also provides a future perspective on advancing MST applications for environmental research.
Sammendrag
Zoogenic faecal contamination of the environment is one of the indices included in the evaluation of ecological threats, health hazards and adverse impacts on various ecosystems. The risks and environmental concerns are associated with the fact that faeces of wild and domesticated animals constitute the largest source of environmental loading of enteropathogens associated with transmission of zoonotic diseases (enteric zoonoses). Although sick animals are more likely to transmit pathogens, healthy ones can also be the carriers and defecate them into the environment. This is of particular importance given the close human-animal interactions and health effects resulting from human and ecological exposures to faecal hazards from companion and farm animals. We have therefore set out to investigate whether healthy equines can carry and defecate human infectious pathogens. For this purpose, we set up a pilot study to examine the faecal DNA of horses using culture-independent molecular diagnostics – fluorescent probe-based quantitative real-time PCR. Our results revealed that among a total of 23 horses, 6 were found to carry Campylobacter jejuni (C. jejuni), and 5 had Salmonella enterica serovar Typhimurium (S. Typhimurium). Moreover, Enterococcus faecalis (E. faecalis) was found in 14 horses, while 19 were positive for Clostridium perfringens (C. perfringens). Furthermore, the frequently reported protozoan parasites in livestock, Cryptosporidium parvum (C. parvum) and Giardia lamblia (G. lamblia), were discovered in 8 and 7 samples, respectively. This pilot study shed new light on the phenomenon of healthy horses carrying C. jejuni and other human-health-related enteropathogens.
Vitenskapelig – Molecular Diagnostic Tools Applied for Assessing Microbial Water Quality
Lisa Paruch
Forfattere
Lisa ParuchSammendrag
Microbial water quality is of vital importance for human, animal, and environmental health. Notably, pathogenically contaminated water can result in serious health problems, such as waterborne outbreaks, which have caused huge economic and social losses. In this context, the prompt detection of microbial contamination becomes essential to enable early warning and timely reaction with proper interventions. Recently, molecular diagnostics have been increasingly employed for the rapid and robust assessment of microbial water quality implicated by various microbial pollutants, e.g., waterborne pathogens and antibiotic-resistance genes (ARGs), imposing the most critical health threats to humans and the environment. Continuous technological advances have led to constant improvements and expansions of molecular methods, such as conventional end-point PCR, DNA microarray, real-time quantitative PCR (qPCR), multiplex qPCR (mqPCR), loop-mediated isothermal amplification (LAMP), digital droplet PCR (ddPCR), and high-throughput next-generation DNA sequencing (HT-NGS). These state-of-the-art molecular approaches largely facilitate the surveillance of microbial water quality in diverse aquatic systems and wastewater. This review provides an up-to-date overview of the advancement of the key molecular tools frequently employed for microbial water quality assessment, with future perspectives on their applications.
Forfattere
Andre van Eerde Aniko Varnai Yanliang Wang Lisa Paruch John-Kristian Jameson Fen Qiao Hans Geir Eiken Hang Su Vincent Eijsink Jihong Liu ClarkeSammendrag
Giant panda could have bamboo as their exclusive diet for about 2 million years because of the contribution of numerous enzymes produced by their gut bacteria, for instance laccases. Laccases are blue multi-copper oxidases that catalyze the oxidation of a broad spectrum of phenolic and aromatic compounds with water as the only byproduct. As a “green enzyme,” laccases have potential in industrial applications, for example, when dealing with degradation of recalcitrant biopolymers, such as lignin. In the current study, a bacterial laccase, Lac51, originating from Pseudomonas putida and identified in the gut microbiome of the giant panda’s gut was transiently expressed in the non-food plant Nicotiana benthamiana and characterized. Our results show that recombinant Lac51 exhibits bacterial laccase properties, with optimal pH and temperature at 7–8 and 40°C, respectively, when using syringaldazine as substrate. Moreover, we demonstrate the functional capability of the plant expressed Lac51 to oxidize lignin using selected lignin monomers that serve as substrates of Lac51. In summary, our study demonstrates the potential of green and non-food plants as a viable enzyme production platform for bacterial laccases. This result enriches our understanding of plant-made enzymes, as, to our knowledge, Lac51 is the first functional recombinant laccase produced in plants.
2021
Sammendrag
This study describes microbial and chemical source tracking approaches for water pollution in rural and urban catchments. Culturable faecal indicator bacteria, represented by Escherichia coli, were quantified. Microbial source tracking (MST) using host-specific DNA markers was applied to identify the origins of faecal contamination. Chemical source tracking (CST) was conducted to determine contaminants of emerging concern (CEC) of human/anthropogenic origin, including pharmaceuticals and personal care products (PPCPs) and endocrine-disrupting chemicals (EDCs). In addition, the eutrophication-causing macronutrients nitrogen and phosphorus were studied. MST tests revealed both anthropogenic and zoogenic faecal origins, with a dominance of human sources in the urban stream; non-human/environmental sources were prevalent in the rural creek. CST analyses revealed a higher number of CECs in the urban stream than in the rural watercourse. Positive correlations between PPCPs and both E. coli and the human DNA marker were uncovered in the urban stream, while in the rural creek, PPCPs were only highly correlated with the anthropogenic marker. Interestingly, macronutrients were strongly associated with primary faecal pollution origins in both watercourses. This correlation pattern determines the main pollutant contributors (anthropogenic or zoogenic) to eutrophication.