Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2011
Forfattere
Arne Hermansen Merete Wiken Dees Arild Sletten Ricardo Holgado Eldrid Lein Molteberg Tor J. Johansen May Bente Brurberg Ragnhild Nærstad Vinh Hong LeSammendrag
Det er ikke registrert sammendrag
2010
Forfattere
May Bente Brurberg Xiaoren Chen Jahn Davik Håvard Eikemo Inger Martinussen Monica Skogen Yang Hu Abdelhameed Elameen Sonja KlemsdalSammendrag
Phytophthora cactorum causes crown rot in strawberry (Fragaria x ananassa Dutch.), which is characterized by wilting and eventually collapse of the plant. An efficient control measure is the use of resistant cultivars, however most commercial cultivars are susceptible to the disease. The aim of our work is to generate basic knowledge about P. cactorum resistance as well as to develop genetic markers that can be used as tools for development of resistant cultivars. The genetic complexity of the octoploid cultivated strawberry, has led to development of the diploid wild strawberry (F. vesca) as a model system for Fragaria. We have identified suitable parents after screening accessions of diploid Fragaria sp. for resistance [1], and generated a mapping population which we are currently characterizing. In order to study the plant-pathogen interaction in detail we have identified and characterized resistance genes from diploid strawberry and effector genes from P. cactorum using different transcriptional analysis techniques; nucleotide-binding site (NBS)-profiling for resistance genes, and suppression subtractive hybridization (SSH) as well as a designed effector-specific differential display (ESDD) for genes involved in pathogenicity. This work is supported by The Research Council of Norway. [1] Eikemo H, Brurberg MB, Davik J (2010). Resistance to Phytophthora cactorum in diploid Fragaria species. HortScience. 45:193-197.
Sammendrag
Norway spruce expresses a temperature-dependent epigenetic memory from the time of embryo development, which thereafter influences the timing bud phenology. MicroRNAs (miRNAs)are endogenous small RNAs, exerting epigenetic gene regulatory impacts. We have tested for their presence and differential expression. We prepared concatemerized small RNA libraries from seedlings of two full-sib families, originated from seeds developed in a cold and warm environment. One family expressed distinct epigenetic effects while the other not. We used available plant miRNA query sequences to search for conserved miRNAs and from the sequencing we found novel ones; the miRNAs were monitored using relative real time-PCR. Sequencing identified 24 novel and four conserved miRNAs. Further screening of the conserved miRNAs confirmed the presence of 16 additional miRNAs. Most of the miRNAs were targeted to unknown genes. The expression of seven conserved and nine novel miRNAs showed significant differences in transcript levels in the full-sib family showing distinct epigenetic difference in bud set, but not in the nonresponding full-sib family. Putative miRNA targets were studied. Norway spruce contains a set of conserved miRNAs as well as a large proportion of novel nonconserved miRNAs. The differentially expression of specific miRNAs indicate their putative participation in the epigenetic regulation.
Sammendrag
Rotkjuke, Heterobasidion annosum s.l. er et stort problem i de nordlige barskogsområder. I Norge er hele 20 prosent av grantrærne angrepet av denne skadesoppen. Dette fører ikke bare til at tømmeret blir ubrukelig til de fleste formål, men også til frigjøring av mye CO2 som ellers ville vært bundet i trærne. Rotkjuka angriper via rotkontakter. Dette skjer ofte via stubber av felte nabotrær etter hogst eller tynning. Soppen ødelegger stammen opp til tolv meter fra bakkenivå.
Forfattere
Jens Rohloff Per Winge Jahn Davik May Bente Brurberg K Mockaitis V Shulaev SK Randall Atle Bones Muath AlsheikhSammendrag
In order to support functional genomics research in octoploid (Fragaria x ananassa Duch.) and diploid (F. vesca) strawberry, a customized Fragaria microarray chip was developed as a joint collaboration between Graminor Breeding Ltd. and NTNU. F. vesca cDNA sequences were provided by The Center for Genomics and Bioinformatics, Indiana University (an assembly of >3 million reads from GS-FLX Titanium - Roche/454 Life Sciences sequencing), and about 59,000 publicly available Fragaria EST sequences were uploaded from NCBI. In addition, ~190 Mb of preliminary draft genome sequences from F. vesca were provided by the Strawberry Genome Sequencing Consortium (courtesy to V. Shulaev). cDNAs used as templates for probe design were validated by BlastN against the F. vesca draft genome excluding cDNAs of microbial origin. Genes not represented in the cDNA collection were identified by screening F. vesca draft genome against protein sequences from Arabidopsis thaliana, Vitis vinifera, Ricinus communis and Populus trichocarpa. Exon sequences from genes not found in the cDNAs were included. In total, 43723 unique 60-mer probes were designed and the Agilent eARRAY tool was used to produce a 4x44k format microarray chip. Fragaria chip applicability and feasibility for transcriptional profiling was investigated using either abiotic (low temperature) or biotic (pathogenic fungi) stress treatment. Microarray data will be subsequently integrated with other omics data to address gene-regulatory networks and biological functions. Cold acclimation experiments were focused on short- and long-term effects in meristematic tissue, and revealed the up-regulation of ~100 cold-responsive genes (transcription factors, dehydrins, enzymes), and transcripts involved in starch breakdown and raffinose biosynthesis. Beside central metabolism, secondary metabolism was also strongly modulated as seen by changes in the expression of flavonoid biosynthesis-related genes. Time-course studies of transcriptional responses in F. vesca accessions showing contrasting resistance toward the pathogen Phytophthora cactorum are in progress, and will be presented in-depth.
Sammendrag
Roseroot, Rhodiola rosea, is a perennial herbaceous plant of the family Crassulaceae. The rhizomes of 95 roseroot clones in the Norwegian germplasm collection were analysed and quantified for their content of the bioactive compounds rosavin, salidroside, rosin, cinnamyl alcohol and tyrosol using HPLC analysis. All five bioactive compounds were detected in all 95 roseroot clones but in highly variable quantities. The ranges observed for the different compounds were for rosavin 2.90-85.95mgg-1, salidroside 0.03-12.85mgg-1, rosin 0.08-4.75mgg-1, tyrosol 0.04-2.15mgg-1 and cinnamyl alcohol 0.02-1.18mgg-1. The frequency distribution of the chemical content of each clone did not reflect a certain geographic region of origin or the gender of the plant. Significant correlations were found for the contents of several of these bioactive compounds in individual roseroot clones. A low, but not significant correlation was found between AFLP markers previously used to study the genetic diversity of the roseroot clones and their production of the chemical compounds. The maximum level of rosavin, rosin and salidroside observed were higher than for any roseroot plant previously reported in literature, and the roseroot clones characterized in this study might therefore prove to be of high pharmacological value.
Forfattere
Paal KrokeneSammendrag
Granbarkbillen er vårt viktigste skadedyr på gran. Selv om billene kun er på størrelse med et riskorn kan de drepe grantrær som er 100 millioner ganger større enn dem selv! Hemmeligheten bak billenes suksess er samarbeid. For det første må billene angripe i samlet flokk for å overmanne forsvaret til et friskt grantre. Billene samordner angrepene sine ved hjelp av feromoner. Dette er duftstoffer som billene produserer når de har funnet et egnet tre og som virker tiltrekkende på andre granbarkbiller. Når et tre blir utsatt for hundre- eller tusenvis av angrep på en gang klarer ikke treets forsvar lenger å stå i mot. Billene er også involvert i en annen form for samarbeid. Hver bille bærer med seg soppsporer som de smitter treet med, og soppen bidrar ytterligere til å bryte ned treets forsvar. I motsetning til billene trenger soppen inn i veden der den stanser vanntransporten fra røttene til trekrona. Dette er hovedgrunnen til at trær som blir angrepet av granbarkbillen tørker og dør mye raskere enn trær som ringbarkes ved å ødelegge barken i en ring rundt stammen.
Sammendrag
Cone and seed insects reduce seed production in seed orchards by feeding on cones and/or seeds and thus cause a lack of seedlings for reforestation. One of the most serious pest species in conifers is the spruce cone worm, Dioryctria abietella. Since 2007, we have used pheromone traps to monitor the flight of this species in Denmark, Finland, Norway and Sweden (and Estonia from 2009). In addition to monitoring, all countries have measured air temperatures in the vicinity of the traps. It is thus possible to correlate flight activity with temperature and temperature sums (accumulated day degrees >5°C). In Sweden cone development has also been registered throughout the monitoring period. Our results show that D. abietella has an extended flight period in Northern Europe, which lasts from late May to late September. Further research is needed to determine if late flying individuals oviposit on shoots or in cones. Increased knowledge about the flight period of D. abietella and how it coincides with temperature and cone development may help us develop better control measures against this important pest.
Forfattere
Paal KrokeneSammendrag
The interaction between conifers, ophiostomatoid fungi and bark beetles is a key factor in conifer ecosystems worldwide, since combined beetle-fungus attacks may cause massive tree mortality, huge economical losses and landscape-level ecological changes. For more than a century researchers have been arguing about who is responsible for tree mortality in bark beetle attacked trees - the beetles themselves or their associated fungi. As in many such polarized debates the best answer probably lies somewhere in between the extremes. The beetles are obviously central in tree killing, as they are actively selecting suitable host trees, short-circuiting tree defenses by boring straight into the relatively defenseless cambial area, and causing mechanical damage to the phloem. However, ophiostomatoid fungi are equally obvious contributors to tree death since nearly all tree-killing bark beetles are associated with such fungi, these fungi are able to colonize and kill healthy phloem and sapwood far beyond the beetle tunnels, and many fungi can kill healthy trees in experimental mass-inoculations. Thus, the trees are facing a beetle-fungus complex that probably acts synergistically to overwhelm tree defenses. The beetles’ mass-attack strategy is central to the success of the beetle-fungus complex, since multiple attacks deplete tree defenses and speed up tree-killing.
Forfattere
Jens Rohloff Per Winge Jahn Davik May Bente Brurberg Keithanne Mockaitis Vladimir Shulaev Stephen K, Randall Atle M. Bones Muath AlsheikhSammendrag
In order to support functional genomics research in octoploid (Fragaria x ananassa Duch.) and diploid (F. vesca) strawberry, a customized Fragaria microarray chip was developed as a joint collaboration between Graminor Breeding Ltd. and NTNU. F. vesca cDNA sequences were provided by The Center for Genomics and Bioinformatics, Indiana University (an assembly of >3 million reads from GS-FLX Titanium - Roche/454 Life Sciences sequencing), and about 59,000 publicly available Fragaria EST sequences were uploaded from NCBI. In addition, ~190 Mb of preliminary draft genome sequences from F. vesca were provided by the Strawberry Genome Sequencing Consortium (courtesy to V. Shulaev). cDNAs used as templates for probe design were validated by BlastN against the F. vesca draft genome excluding cDNAs of microbial origin. Genes not represented in the cDNA collection were identified by screening F. vesca draft genome against protein sequences from Arabidopsis thaliana, Vitis vinifera, Ricinus communis and Populus trichocarpa. Exon sequences from genes not found in the cDNAs were included. In total, 43723 unique 60-mer probes were designed and the Agilent eARRAY tool was used to produce a 4x44k format microarray chip. Fragaria chip applicability and feasibility for transcriptional profiling was investigated using either abiotic (low temperature) or biotic (pathogenic fungi) stress treatment. Microarray data will be subsequently integrated with other omics data to address gene-regulatory networks and biological functions. Cold acclimation experiments were focused on short- and long-term effects in meristematic tissue, and revealed the up-regulation of ~100 cold-responsive genes (transcription factors, dehydrins, enzymes), and transcripts involved in starch breakdown and raffinose biosynthesis. Beside central metabolism, secondary metabolism was also strongly modulated as seen by changes in the expression of flavonoid biosynthesis-related genes. Time-course studies of transcriptional responses in F. vesca accessions showing contrasting resistance toward the pathogen Phytophthora cactorum are in progress, and will be presented in-depth.