Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2019
Authors
Hugh Morris Ari Hietala Steven Jansen Javier Ribera Sabine Rosner Khalifah A. Salmeia Francis W. M. R. SchwarzeAbstract
No abstract has been registered
Authors
Dario Isidro Ojeda Alayon Tiina M. Mattila Tom Ruttink Sonja T. Kujala Katri Kärkkäinen Jukka-Pekka Verta Tanja PyhäjärviAbstract
Compared to angiosperms, gymnosperms lag behind in the availability of assembled and annotated genomes. Most genomic analyses in gymnosperms, especially conifer tree species, rely on the use of de novo assembled transcriptomes. However, the level of allelic redundancy and transcript fragmentation in these assembled transcriptomes, and their effect on downstream applications have not been fully investigated. Here, we assessed three assembly strategies for short-reads data, including the utility of haploid megagametophyte tissue during de novo assembly as single-allele guides, for six individuals and five different tissues in Pinus sylvestris. We then contrasted haploid and diploid tissue genotype calls obtained from the assembled transcriptomes to evaluate the extent of paralog mapping. The use of the haploid tissue during assembly increased its completeness without reducing the number of assembled transcripts. Our results suggest that current strategies that rely on available genomic resources as guidance to minimize allelic redundancy are less effective than the application of strategies that cluster redundant assembled transcripts. The strategy yielding the lowest levels of allelic redundancy among the assembled transcriptomes assessed here was the generation of SuperTranscripts with Lace followed by CD-HIT clustering. However, we still observed some levels of heterozygosity (multiple gene fragments per transcript reflecting allelic redundancy) in this assembled transcriptome on the haploid tissue, indicating that further filtering is required before using these assemblies for downstream applications. We discuss the influence of allelic redundancy when these reference transcriptomes are used to select regions for probe design of exome capture baits and for estimation of population genetic diversity.
Authors
Trond Løvdal Bart Van Droogenbroeck Evren Caglar Eroglu Stanislaw Kaniszewski Giovanni Agati Michel Verheul Dagbjørn SkipnesAbstract
There is a large potential in Europe for valorization in the vegetable food supply chain. For example, there is occasionally overproduction of tomatoes for fresh consumption, and a fraction of the production is unsuited for fresh consumption sale (unacceptable color, shape, maturity, lesions, etc.). In countries where the facilities and infrastructure for tomato processing is lacking, these tomatoes are normally destroyed, used as landfilling or animal feed, and represent an economic loss for producers and negative environmental impact. Likewise, there is also a potential in the tomato processing industry to valorize side streams and reduce waste. The present paper provides an overview of tomato production in Europe and the strategies employed for processing and valorization of tomato side streams and waste fractions. Special emphasis is put on the four tomato-producing countries Norway, Belgium, Poland, and Turkey. These countries are very different regards for example their climatic preconditions for tomato production and volumes produced, and represent the extremes among European tomato producing countries. Postharvest treatments and applications for optimized harvest time and improved storage for premium raw material quality are discussed, as well as novel, sustainable processing technologies for minimum waste and side stream valorization. Preservation and enrichment of lycopene, the primary health promoting agent and sales argument, is reviewed in detail. The European volume of tomato postharvest wastage is estimated at >3 million metric tons per year. Together, the optimization of harvesting time and preprocessing storage conditions and sustainable food processing technologies, coupled with stabilization and valorization of processing by-products and side streams, can significantly contribute to the valorization of this underutilized biomass.
Abstract
No abstract has been registered
Authors
Ana de la Moneda Maria Dolores Carro Martin Riis Weisbjerg Michael Roleda Vibeke Lind Margarita Novoa-Garrido Eduarda Molina-AlcaideAbstract
This study was designed to analyze the chemical composition and in vitro rumen fermentation of eight seaweed species (Brown: Alaria esculenta, Laminaria digitata, Pelvetia canaliculata, Saccharina latissima; Red: Mastocarpus stellatus, Palmaria palmata and Porphyra sp.; Green: Cladophora rupestris) collected in Norway during spring and autumn. Moreover, the in vitro ruminal fermentation of seventeen diets composed of 1:1 oat hay:concentrate, without (control diet) or including seaweeds was studied. The ash and N contents were greater (p < 0.001) in seaweeds collected during spring than in autumn, but autumn-seaweeds had greater total extractable polyphenols. Nitrogen in red and green seaweeds was greater than 2.20 and in brown seaweeds, it was lower than 1.92 g/kg DM. Degradability after 24 h of fermentation was greater in spring seaweeds than in autumn, with Palmaria palmata showing the greatest value and Pelvetia canaliculata the lowest. Seaweeds differed in their fermentation pattern, and autumn Alaria esculenta, Laminaria digitata, Saccharina latissima and Palmaria palmata were similar to high-starch feeds. The inclusion of seaweeds in the concentrate of a diet up to 200 g/kg concentrate produced only subtle effects on in vitro ruminal fermentation.
Abstract
S. 33 i . https://www.iufro.org/fileadmin/material/publications/proceedings-archive/20209-ctre-proceedings-19.pdf
Authors
Shahid Nadeem Håvard Steinshamn Elin Halvorsen Sikkeland Anne-Maj Gustavsson Anne Kjersti BakkenAbstract
Red clover (Trifolium pratense) grown in mixtures with grasses often constitutes a lower proportion of total yield in spring than in summer growth. A more even red clover proportion between the harvests would benefit forage quality and management at feeding. We investigated whether inclusion of early versus late‐maturing red clover varieties could reduce this disproportionality. In a two‐year field trial harvested three times per season, each of six red clover varieties was grown in two grass mixtures. Rate of phenological development did not differ during spring growth, but did so in regrowth after first and second cuts. Here, the earliest varieties constituted the highest proportion. At all harvests, the early varieties had lower crude protein concentrations and a higher content of neutral detergent fibre (NDF) and indigestible NDF than the late varieties. Clover proportion was higher in swards with a mixture of timothy and meadow fescue than in swards with perennial ryegrass during the first year and lower in the second year. It is concluded that developmental rate should be explored further as a key character for red clover competiveness in spring growth of rapidly elongating grasses.
Authors
Finn-Arne HaugenAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
This study addresses changes in visual appearance of unpainted wood materials exposed outdoors. Specimens of aspen (Populus tremula), Norway spruce (Picea abies), untreated Scots pine (Pinus sylvestris), DMDHEU-modified Scots pine and acetylated Radiata pine (Pinus radiata) were exposed facing south in Ås, Norway for 62 weeks. During this period, mould growth coverage, lightness (L*) and the uniformity of the weather grey colour were assessed. Mould growth coverage was evaluated visually using a rating system. L* and the uniformity were evaluated using image analysis. The increase in mould rating of the wood materials developed in varying speed, but all specimens had reached the maximum rating after 42 weeks. Until then, the changes in L* correlated significantly with the mould rating. However, the specimens continued to darken after they had reached maximum mould rating. DMDHEU was the only material that obtained a more uniform colour as a consequence of the weathering.