Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2025
Authors
Sanne van Gastelen Andre Bannink Chaouki Benchaar Arjan Jonker David Kenny Vibeke Lind Morten Maigaard Camila Munoz Christopher Reynolds Jan DijkstraAbstract
No abstract has been registered
Authors
Katja Karppinen Declan J. Lafferty Hilary Edema Tony McGhie Nick W. Albert Richard W. Espley Laura JaakolaAbstract
No abstract has been registered
Authors
Katja Karppinen Lauri Raami Hilary Edema Muhammad Furqan Ashraf Heikki M. Salo Richard V. Espley Laura JaakolaAbstract
Abstract Bilberry ( Vaccinium myrtillus L.) fruit are one of the best natural sources of anthocyanins. Anthocyanin and flavonoid biosynthesis are transcriptionally regulated by the conserved MBW complex, including R2R3 MYB, basic helix-loop-helix (bHLH) and WD40 proteins. In this study, homology-search in the bilberry genome identified three putative anthocyanin biosynthesis-regulating bHLH genes, all containing a MYB binding domain, indicating their possible interaction with R2R3 MYBs. Phylogenetic analysis assigned the VmbHLHs to three different clusters within the IIIf subgroup of bHLHs. The expression of VmbHLH2 elevated at berry ripening, while VmbHLH1 and VmbHLH3 showed decreasing expression towards berry maturation. When transiently overexpressed together with MdMYB10 in Nicotiana benthamiana leaves, VmbHLH2 and VmbHLH3 were able to complement MdbHLH3 and upregulate a full set of anthocyanin biosynthetic genes leading to anthocyanin accumulation. In contrast, VmbHLH1 induced a reduced set of flavonoid pathway genes. Our results provide the first functional characterization of flavonoid-regulating bHLHs that contribute to the MBW complex in the economically important genus Vaccinium. We propose that the TT8-type VmbHLH2 is involved in anthocyanin biosynthesis in ripening bilberry fruit, while the MYC1-type VmbHLH1 and GL3/EGL3-type VmbHLH3 are associated with anthocyanin and PA biosynthesis, mainly in tissues other than berries.
Authors
Priyanka Trivedi Gang-Shuai Liu Linards Klavins Raktim Bhattacharya Soile Jokipii-Lukkari Adinpunya Mitra Maris Klavins Da-qi Fu Laura Jaakola Anna Szakiel Katja KarppinenAbstract
Abstract The cuticle and cuticular waxes play vital roles as the interface between a plant and its environment. Cuticular waxes are composed of very long-chain fatty acids (VLCFAs) and their derivatives as well as triterpenoids, which are specialized metabolites. Although triterpenoids constitute a major fraction of cuticular waxes, their functions remain poorly understood. In this review, we provide an overview of the chemical diversity of triterpenoids in the cuticular waxes of leaves and fruits of angiosperms and discuss changes in triterpenoid content during their development. The methods and challenges for the analysis of cuticular wax triterpenoids are summarized. The biosynthesis of triterpenoids is also reviewed along with recent knowledge of the potential mechanisms of triterpenoid transportation and secretion from the site of biosynthesis to the plant surface. Considering ongoing climate change, the current understanding of the effects of environmental conditions and abiotic stress factors on cuticular wax triterpenoids is reviewed. We also present an overview of the current knowledge on the roles of triterpenoids in cuticular waxes in transpiration and defense against biotic stressors and their possible role in cuticle stabilization. Moreover, owing to the generally high levels of triterpenoids in fruit cuticular waxes, the provided information on the variation and role of cuticular wax triterpenoids during postharvest fruit storage might help in the development of strategies for better fruit quality maintenance and preservation.
Authors
Katja Karppinen Hilary Edema Muhammad Furqan Ashraf Laura JaakolaAbstract
No abstract has been registered
Authors
Adam Klimes Joseph Chipperfield Joachim Paul Töpper Marc Macias‐Fauria Marcus Spiegel Vigdis Vandvik Liv Guri Velle Alistair William Robin SeddonAbstract
A number of modelling frameworks exist to estimate resilience from ecological datasets. A subset of these frameworks seeks to estimate the whole ‘stability landscape', which can be used to calculate resilience and identify stable states and tipping points. These methods provide opportunities for insights into possible causes and consequences of variation in ecosystem resilience and dynamics. However, because such models can be complex to implement, there has so far been a substantial barrier to their application in ecological research. Here, we present the ‘mixglm' package for R software, which parametrizes stability landscapes using a mixture model approach. It provides tools for the calculation of resilience, identification of stable states and tipping points, as well as visualization functions. Flexible model specification allows the mean, precision, and probability of each mixture component to be linked to multiple predictors, such as environmental covariates. ‘mixglm' is based on Bayesian inference via NIMBLE and supports normal, beta, gamma, and negative binomial distributed response variables. We illustrate the use of ‘mixglm' with a published case of tree cover in South America, which reports a stability landscape with distinct stable states. Using ‘mixglm', we replicated the identification of these states. Moreover, we quantified the uncertainty of our estimates, and computed resilience estimates of South America's forests. We also conducted a power analysis to provide guidance regarding required sample sizes. ‘mixglm' can be readily used to describe stability landscapes and identify stable states in most spatial datasets, and it is accompanied by tools for the calculation of resilience estimates.
Authors
Catharina Caspara Vloon Rune Halvorsen Jørn-Frode Nordbakken Joachim Paul Töpper Inger Auestad Knut RydgrenAbstract
ABSTRACT Question How do vascular plant and cryptogam cover, bare peat area and species composition in different microforms on a boreal raised bog change over a 34‐year period (1988–2022)? We discuss the observed patterns in the light of ongoing climate change. Location Rønnåsmyra Nature Reserve, south‐eastern Norway. Methods We recorded total vascular plant and cryptogam cover, bare peat area and species composition in 51 permanent 0.5 × 0.5 m plots in 1988, 2004 and 2022. The plots were assigned to microform classes (carpet, lawn, hummock) based on their characteristics in 1988 and 2022. We analysed changes over time and explored the relationship between change in species composition and change in the relative distance from the bog surface to the groundwater table (rDWT) in each microform using linear mixed‐effect models and ordination (GNMDS). Results No shifts between microforms had occurred during the 34‐year period, but the number of observed taxa had decreased from 51 to 38. While the vegetation changed very little between 1988 and 2004, substantial changes occurred from 2004 to 2022. During this period, carpets showed a substantial increase in bare peat at the cost of cryptogam and vascular plant cover. Lawns showed a similar but less strong trend. Hummocks showed no such changes. The species composition of all microforms changed towards vegetation typical of wetter bog surfaces. In hummocks, this implied a shift from dominance by lichens to dominance by strongly peat‐producing Sphagnum species of section Acutifolia , coupled with an increase in rDWT. Conclusion We demonstrate that bog vegetation can change substantially within two decades. The observed, divergent successions—retrogressive in carpets and lawns and progressive in hummocks—may result from the responses of the cryptogam layer to a combination of increased temperature and increased precipitation. Extreme weather events may have contributed to the increase in bare peat.
Authors
Arne SteffenremAbstract
No abstract has been registered
Authors
Marius Filomeno Maurstad Iris Bea Ramiro Jan Philip Øyen Andy Sombke Sebastian Büsse Pedro Gabriel Nachtigall Kjetill Sigurd Jakobsen Eivind Andreas Baste UndheimAbstract
Abstract Venom has independently evolved across many lineages, yet relatively few have been studied in detail, particularly among insects. Of these, Neuroptera (lacewings, antlions and relatives) remain largely unexplored, despite being widespread with agriculturally important groups such as green lacewings. While adults are non-venomous, neuropteran larvae are ferocious predators that use pincer-like mouthparts to inject paralysing and liquefying venom to subdue and consume their prey. Here, we provide a comprehensive investigation of the venom system in Neuroptera by integrating a high-quality genome, long-read transcriptomes spanning all life stages, microCT-reconstruction of venom glands, tissue-specific expression analyses, venom proteomics, and functional assays of the common green lacewing Chrysoperla carnea. We provide a re-description of the neuropteran venom system, demonstrate the venom’s insecticidal and cytotoxic activity, and show the venom comprises diverse toxin gene families and is richer and more similar to the venom of antlions than previously proposed. We show that this toxin arsenal is the result of a multitude of evolutionary events that include co-option, recruitment following gene duplication, diversification of toxin-paralogs by gene duplication, and functional innovation of new paralogs through both small structural and large architectural changes. In addition, we find that alternative splicing of toxin genes is an important contributor to the biochemical arsenal, which is a mechanism rarely documented among venomous animals. Our results demonstrate how multiple genomic and evolutionary mechanisms together contribute to the emergence and evolution of a complex molecular trait, and provide new insights into the evolution of venom in insects.
Abstract
No abstract has been registered