Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Abstract
Aquatic microbial diversity, composition, and dynamics play vital roles in sustaining water ecosystem functionality. Yet, there is still limited knowledge on bacterial seasonal dynamics in lotic environments. This study explores a temporal pattern of bacterial community structures in lotic freshwater over a 2-year period. The aquatic bacterial communities were assessed using Illumina MiSeq sequencing of 16S rRNA genes. Overall, the communities were dominated by α-, β-, and γ-Proteobacteria, Bacteroidetes, Flavobacteriia, and Sphingobacteriia. The bacterial compositions varied substantially in response to seasonal changes (cold vs. warm), but they were rather stable within the same season. Furthermore, higher diversity was observed in cold seasons compared to warm periods. The combined seasonal-environmental impact of different physico-chemical parameters was assessed statistically, and temperature, suspended solids, and nitrogen were determined to be the primary abiotic factors shaping the temporal bacterial assemblages. This study enriches particular knowledge on the seasonal succession of the lotic freshwater bacteria.
Abstract
No abstract has been registered
Authors
D. Wade Abbott Inga Marie Aasen Karen A. Beauchemin Fredrik Grondahl Robert Gruninger Maria Hayes Sharon Huws David A. Kenny Sophie J. Krizsan Stuart F. Kirwan Vibeke Lind Ulrich Meyer Mohammad Ramin Katerina Theodoridou Dirk van Soosten Pamela J. Walsh Sinead Waters Xiaohui XingAbstract
The need to become more efficient in agriculture and the food industry exists parallel to the challenge of climate change. Meat and dairy production is the target of much scrutiny due to methane (CH4) emissions and global warming. On the other hand, it should be noted that two-thirds of the world’s agricultural land consists of pastures and permanent grasslands and is used for livestock grazing. This land is predominantly unsuitable for arable purposes but facilitates the production of high-quality human-edible protein in the form of ruminant animal-derived meat and milk. This makes a significant contribution to feeding the world’s population. There is a need to reduce CH4 emissions, however, and several approaches are being researched currently. Seaweeds are diverse plants containing bioactives that differ from their terrestrial counterparts and they are increasingly under investigation as a feed supplement for the mitigation of enteric CH4. Seaweeds are rich in bioactives including proteins, carbohydrates and to a lesser extent lipids, saponins, alkaloids and peptides. These bioactives could also play a role as feed ingredients to reduce enteric CH4. This review collates information on seaweeds and seaweed bioactives and their potential to impact on enteric CH4 emissions.
Authors
Svein Øivind Solberg Guro Brodal Roland von Bothmer Eivind Meen Flemming Yndgaard Christian Andreasen Åsmund AsdalAbstract
More than 30 years ago, the Nordic Gene Bank established a long-term experiment on seeds stored under permafrost conditions in an abandoned mine corridor in Svalbard, as a tool to monitor storage life under these conditions. The study included seeds from 16 Nordic agricultural and horticultural crops, each represented by two or three cultivars (altogether 38 accessions). All seeds were ultra-dried to 3–5% moisture before being sealed in glass tubes. Germination tests were performed in accordance with the International Seed Testing Association (ISTA) protocols. At the initiation of the experiment, the samples showed good germination with the median value at 92%. The overall picture remained stable over the first twenty to twenty-five years. However, the variation became larger over time and at 30 years, the median value had dropped to 80%. At the lower end, with a high drop in germination, we found rye, wheat, and English ryegrass. At the upper end, we found Kentucky bluegrass and cucumber. The lowest germination was found in samples with the highest initial seed moisture levels. Pre-storage conditions are likely to be of major importance for longevity.
Abstract
Controlled crosses were made on clones in a seed orchard and the pollination bags were kept on the branches until the cones were harvested. Cones after open pollination were collected at the same time. Seedlings from the controlled pollinations, from open pollination of the same maternal parent and from commercial provenances were grown in growth chambers and terminal bud set was recorded after short day treatments. The seedlings from the seeds of cones that were kept in the pollination bags had a significantly later bud set then expected based on comparisons with their half-sibs from open pollination. The difference corresponds to a decrease in altitude of 100 m at provenance level. It can be caused by epigenetic effects due to temperature differences inside and outside the bags during seed maturation.
Abstract
Key message This study showed that regeneration success (presence of oaks ≥ 150 cm in total height) in artificial canopy openings of a mature mixed sessile oak stand was mainly driven by initial oak seedling density. Context Small-scale harvesting methods as practiced in close-to-nature forestry may disadvantage the regeneration of more light-demanding tree species including sessile oak (Quercus petraea [Mattuschka] Liebl.) and thus cause regeneration failure. However, owing to the short-term nature of many previous studies, regeneration success of sessile oak could not be properly ascertained. Aims This study examined oak seedling development over a time period of ten growing seasons in canopy openings of 0.05 to 0.2 ha in size created through group selection harvesting in a mature mixed sessile oak forest in southwestern Germany. We tried to answer the following research questions: (i) how do initial stand conditions relate to and interact with oak seedling density and seedling height growth, and (ii) what are the driving factors of regeneration success under the encountered site conditions. Methods We evaluated the influence of solar radiation, Rubus spp. cover, initial oak seedling density, and competition from other tree species on change in density and height of oak seedlings, as well as overall regeneration success (oak seedlings ≥ 150 cm in height). Results Regeneration success increased with initial oak seedling density and solar radiation levels and decreased with early Rubus spp. cover. Density and maximum height of oak seedlings was negatively related with competition of other woody species. Conclusion Results of our longer-term study demonstrate that forest management activities to regenerate sessile oak naturally are only successful in stands (i) without advance regeneration of other woody species and without established, recalcitrant ground vegetation, (ii) with a sufficiently high initial oak seedling density in larger patches following mast years, and (iii) where periodic monitoring and control of competing woody individuals can be ensured. Our findings further corroborate the view that natural regeneration of sessile oak in small-scale canopy openings is possible in principle.
Authors
Inger Sundheim FløistadAbstract
No abstract has been registered
Authors
Sherin Jose Joel Abbey Laura Jaakola David PercivalAbstract
Monilinia blight disease caused by Monilinia vaccinii-corymbosi (Reade) Honey (M.vc) causes severe damage and economic losses in wild blueberry growing regions. Molecular mechanisms regulating defence responses of wild blueberry phenotypes towards this causal fungus are not yet fully known. A reliable quantification of gene expression using quantitative real time PCR (qPCR) is fundamental for measuring changes in target gene expression. A crucial aspect of accurate normalisation is the choice of appropriate reference genes. This study evaluated the expression stability of seven candidate reference genes (GAPDH, UBC9, UBC28, TIP41, CaCSa, PPR and RH8) in floral tissues of diploid and tetraploid wild blueberry phenotypes challenged with M.vc. The expression stability was calculated using five algorithms: geNorm, NormFinder, BestKeeper, deltaCt and RefFinder. The results indicated that UBC9 and GAPDH were the most stable reference genes, while RH8 and PPR were the least stable ones. To further validate the suitability of the analyzed reference genes, the expression level of a pathogenesis related protein gene (i.e., PR3) was analysed for both phenotypes at four time points of infection. Our results may be beneficial for future studies involving the quantification of relative gene expression levels in wild blueberry species.
Authors
Rowena C. Downie Min Lin Beatrice Corsi Andrea Ficke Morten Lillemo Richard P. Oliver Huyen T. T. Phan Kar-Chun Tan James CockramAbstract
The fungus Parastagonospora nodorum is a narrow host range necrotrophic fungal pathogen that causes Septoria nodorum blotch (SNB) of cereals, most notably wheat. Although commonly observed on wheat seedlings, P. nodorum infection has the greatest effect on the adult crop. It results in leaf blotch, which limits photosynthesis and thus crop growth and yield. It can also affect the wheat ear, resulting in glume blotch which directly affects grain quality. Reports of P. nodorum fungicide resistance, the increasing use of reduced tillage agronomic practices and high evolutionary potential of the pathogen, combined with changes in climate and agricultural environments, mean that genetic resistance to SNB remains a high priority in many regions of wheat cultivation. In this review, we summarise current information on P. nodorum population structure and its implication for improved SNB management. We then review recent advances in the genetics of host resistance to P. nodorum and the necrotrophic effectors it secretes during infection, integrating the genomic positions of these genetic loci using the recently released wheat reference genome assembly. Finally, we discuss the genetic and genomic tools now available for SNB resistance breeding and consider future opportunities and challenges in crop health management using the wheat-P. nodorum interaction as a model.
Authors
Simon Jakobsson Joachim Paul Töpper Marianne Evju Erik Framstad Anders Lyngstad Bård Pedersen Hanne Sickel Anne Sverdrup-Thygeson Vigdis Vandvik Liv Guri Velle Per Arild Aarrestad Signe NybøAbstract
Effective evidence-based nature conservation and habitat management relies on developing and refining our methodological toolbox for detecting critical ecological changes at an early stage. This requires not only optimizing the use and integration of evidence from available data, but also optimizing methods for dealing with imperfect knowledge and data deficiencies. For policy and management relevance, ecological data are often synthesized into indicators, which are assessed against reference levels and limit values. Here we explore challenges and opportunities in defining ecological condition in relation to a reference condition reflecting intact ecosystems, as well as setting limit values for good ecological condition, linked to critical ecological thresholds in dose–response relationships between pressures and condition variables. These two concepts have been widely studied and implemented in aquatic sciences, but rarely in terrestrial systems. In this paper, we address practical considerations, theoretical challenges and possible solutions using different approaches to determine reference and limit values for good ecological condition in terrestrial ecosystems, based on empirical experiences from a case study in central Norway. We present five approaches for setting indicator reference values for intact ecosystems: absolute biophysical boundaries, reference areas, reference communities, ecosystem dynamics based models, and habitat availability based models. We further present four approaches for identifying indicator limit values for good ecological condition: empirically estimated values, statistical distributions, assumed linear relationships, and expert judgement-based limits. This exercise highlights the versatile and robust nature of ecological condition assessments based on reference and limit values for different management purposes, for situations where knowledge of the underlying relationships is lacking, and for situations limited by data availability. Ecological condition Index Management Reference condition Terrestrial