Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Abstract
1. Ecological network theory hypothesizes that the structuring of species interactions can convey stability to the system. Investigating how these structures react to species loss is fundamental for understanding network disassembly or their robustness. However, this topic has mainly been studied in‐silico so far. 2. Here, in an experimental manipulation, we sequentially removed four generalist plants from real plant–pollinator networks. We explored the effects on, and drivers of, species and interaction disappearance, network structure and interaction rewiring. First, we compared both the local extinctions of species and interactions and the observed network indices with those expected from three co‐extinction models. Second, we investigated the trends in network indices and rewiring rate after plant removal and the pollinator tendency at establishing novel links in relation to their proportional visitation to the removed plants. Furthermore, we explored the underlying drivers of network assembly with probability matrices based on ecological traits. 3. Our results indicate that the cumulative local extinctions of species and interactions increased faster with generalist plant loss than what was expected by co‐extinction models, which predicted the survival or disappearance of many species incorrectly, and the observed network indices were lowly correlated to those predicted by co‐extinction models. Furthermore, the real networks reacted in complex ways to plant removal. First, network nestedness decreased and modularity increased. Second, although species abundance was a main assembly rule, opportunistic random interactions and structural unpredictability emerged as plants were removed. Both these reactions could indicate network instability and fragility. Other results showed network reorganization, as rewiring rate was high and asymmetries between network levels emerged as plants increased their centrality. Moreover, the generalist pollinators that had frequently visited both the plants targeted of removal and the non‐target plants tended to establish novel links more than who either had only visited the removal plants or avoided to do so. 4. With the experimental manipulation of real networks, our study shows that despite their reorganizational ability, plant–pollinator networks changed towards a more fragile state when generalist plants are lost.
Authors
Fatima Heinicke Xiangfu Zhong Karola Manuela Zucknick Johannes Breidenbach Arvind Yegambaram Meenakshi Sundaram Siri Tennebø Flåm Magnus Leithaug Marianne Dalland Simon Rayner Benedicte Alexandra Lie Gregor GilfillanAbstract
High-throughput sequencing has emerged as the favoured method to study microRNA (miRNA) expression, but biases introduced during library preparation have been reported. We recently compared the performance (sensitivity, reliability, titration response and differential expression) of six commercially-available kits on synthetic miRNAs and human RNA, where library preparation was performed by the vendors. We hereby supplement this study with data from two further commonly used kits (NEBNext, NEXTflex) whose manufacturers initially declined to participate. NEXTflex demonstrated the highest sensitivity, which may reflect its use of partially-randomized adapter sequences, but overall performance was lower than the QIAseq and TailorMix kits. NEBNext showed intermediate performance. We reaffirm that biases are kit specific, complicating the comparison of miRNA datasets generated using different kits.
Authors
L. Willocquet W.R. Meza B. Dumont B. Klocke T. Feike K.C. Kersebaum P. Meriggi V. Rossi Andrea Ficke A. Djurle S. SavaryAbstract
Wheat disease management in Europe is mainly based on the use of fungicides and the cultivation of resistant cultivars. Improving disease management implies the formal comparison of disease management methods in terms of both crop health and yield levels (attainable yield, actual yield), thus enabling an assessment of yield losses and yield gains. Such an assessment is not available for wheat in Europe. The objective of the analysis reported here is to provide an overview of wheat health and yield performance in field experiments in Europe. Data from field experiments in six European countries (Belgium, France, Germany, Italy, Norway, and Sweden) conducted between 2013 and 2017 were analysed to that aim. Relationships between multiple disease levels, yield, level of cultivar resistance, level of fungicide protection, and weather patterns were assessed. The analyses included 73 field experiments, corresponding to a total of 447 [fungicide protection level x cultivar] combinations. Analyses across the six countries led to ranking the importance of foliar wheat diseases as follows, in decreasing order: leaf blotch (septoria tritici blotch, septoria nodorum blotch, and tan spot), leaf rust, yellow rust, and powdery mildew. Fusarium head blight was observed in France and Italy, and stem rust was sporadically observed in Italy. Disease patterns, crop inputs (fertiliser, fungicides), and yields widely varied within and across countries. Disease levels were affected by the level of fungicide use, by cultivar resistance, as well as by weather patterns. While this analysis enables a better documentation of the status of wheat health in Europe, it also highlights the critical need for policies in Europe enabling a more judicious use of pesticides. First, common standards for field experiments are needed (experimental designs and protocols; disease assessment procedures and scales; references, including reference-susceptible cultivars); second, assessments in farmers’ fields – and not in research stations – are necessary; and third, there is a need to use available process-based crop models to estimate attainable yields, and so, yield losses.
Abstract
Sweet potato (Ipomoea batatas (L.) Lam.) is an important root crop for poor farmers in developing countries. Since the late 1980s, viral diseases have increasingly become a threat to sweet potato production in Ethiopia. This review paper presents the role of sweet potato production for ensuring food security, the level of sweet potato virus research, including the types of viral species identified and their current level of incidences in Ethiopia. Sweet potato feathery mottle virus (SPFMV), Sweet potato chlorotic stunt virus (SPCSV), Sweet potato virus 2 (SPV2), Sweet potato virus G (SPVG), and Cucumber mosaic virus (CMV) were reported in Ethiopia, where the first two are the most common and exist at high incidences. In addition, this paper discusses the virus vectors, virus transmission methods to new farms, factors exacerbating the rate of viral incidence and the methods used to reduce the incidences. Moreover, it highlights methods of sweet potato viruses’ detection and cleaning of infected materials in use and the challenges encountered towards the efficient utilization of the methods. Finally, we suggest major intervention techniques that will integrate all key players in managing the impact of the virus on sweet potato production to improve productivity and ensuring food security in Ethiopia. The findings obtained from this review could be an input for the current research on sweet potato improvement (both planting materials and routines) in Ethiopia.
Abstract
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Authors
Kaare Magne Nielsen Yngvild Wasteson Siamak Pour Yazdankhah Øivind Bergh Ole Martin Eklo Erik J. Joner Elisabeth Henie Madslien Pål Trosvik Bjørnar YtrehusAbstract
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Authors
Malte Müller Leif Christian Stige Geir W. Gabrielsen Øyvind Rinaldo Stig Morten Knudsen Rolf Rødven Anne Christine Brussard Tor EldevikAbstract
No abstract has been registered
Abstract
Studying summer farming and farm dairies in Sweden and Norway—the shared empirical basis of this essay—using methods that require a close proximity between the researcher and the researched working closely together can be a challenge. This is especially obvious when the studied community is subjected to frequent studies conducted by scholars and authorities. It became even more complicated as the researchers had different roles in the three projects discussed in this text. In Project One, researchers developed knowledge together with summer farmers, in Project Two the research group interacted with the summer farmers while implementing the UN Convention on Biological Diversity on behalf of the Swedish government and in Project Three researchers addressed summer farmers as respondents. It is our experience that research in which interaction with respondents is close often becomes a target of criticism from other scholars who claim that this type of research is incapable of producing valid and impartial knowledge due to suspected bias. In this article we discuss five types of ethical challenges met in the three projects, two of which are based on a community-based participatory research approach (CBPR) and one on a case study approach (CS). Starting off, from previous literature, we compare ethical dilemmas in both CBPR and CS with the help of the following concepts: creation of partnerships, participation and perceptions of truth, sources of conflicts and mistrust and the consequences of such research for quality, reliability and research integrity. Our research questions are: What are the ethical, practical, methodological, and scientific challenges and implications of research conducted in close proximity to informants? What can the research community learn from such experiences? [...]
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Abstract
No abstract has been registered