Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2018
Abstract
No abstract has been registered
Abstract
We present a methodology for distinguishing between three types of animal movement behavior (foraging, resting, and walking) based on high-frequency tracking data. For each animal we quantify an individual movement path. A movement path is a temporal sequence consisting of the steps through space taken by an animal. By selecting a set of appropriate movement parameters, we develop a method to assess movement behavioral states, reflected by changes in the movement parameters. The two fundamental tasks of our study are segmentation and clustering. By segmentation, we mean the partitioning of the trajectory into segments, which are homogeneous in terms of their movement parameters. By clustering, we mean grouping similar segments together according to their estimated movement parameters. The proposed method is evaluated using field observations (done by humans) of movement behavior. We found that on average, our method agreed with the observational data (ground truth) at a level of 80.75% ± 5.9% (SE).
Authors
Rodrigo B. Onofre J. B. Gatto M. Marin David M. Gadoury Arne Stensvand Mark Rea Andrew Bierman Natalia A. PeresAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Ari Hietala Isabella Børja Hugh Cross Nina Elisabeth Nagy Halvor Solheim Volkmar Timmermann Adam Vivian-SmithAbstract
European ash (Fraxinus excelsior), a keystone species with wide distribution and habitat range in Europe, is threatened at a continental scale by an invasive alien ascomycete, Hymenoscyphus fraxineus. In its native range of Asia, this fungus is a leaf endophyte with weak parasitic capacity and robust saprobic competence in local ash species that are closely related to European ash. In European ash, H. fraxineus has a similar functional role as in Asia, but the fungus also aggressively kills shoots, resulting in crown dieback and tree death. H. fraxineus is a typical invasive species, as its spread relies on high propagule pressure. While crown dieback of European ash is the most obvious symptom of ash dieback, the annual colonization of ash leaves is a crucial key dependency for the invasiveness of H. fraxineus, since its fruiting bodies are formed on overwintered leaf vein tissues in soil debris. Leaves of European ash host a wide range of indigenous epiphytes, endophytes, facultative parasites and biotrophic fungi, including Hymenoscyphus albidus, a relative of H. fraxineus that competes for the same sporulation niche as the invader. At face value, leaves of European ash are colonized by a large and diverse indigenous mycobiome. In order to understand why this invader became successful in Europe, we discuss and summarize the current knowledge of diversity, seasonal dynamics and traits of H. fraxineus and indigenous fungi associated with leaves of European ash.
Abstract
No abstract has been registered
Authors
Leonardo Ciaccheri Lorenza Tuccio Andrea A. Mencaglia Anna G. Mignani Ewelina Hallmann Kalina Sikorska-Zimny Stanislaw Kaniszewski Michel Verheul Giovanni AgatiAbstract
Non-destructive tools for evaluating the lycopene content in tomatoes are of great interest to the entire fruit chain because of an increasing demand for beneficial health products. With the aim of developing compact low-cost reflectance sensors for lycopene determination, we compared Partial Least Squares (PLS) prediction models by using either directional or total reflectance in the 500–750 nm range. Directional reflectance at 45° with respect to the LED lighting direction was acquired by means of a compact spectrometer sensor. Total reflectance was acquired through a 50-mm integrating sphere connected to a spectrometer. The analysis was conducted on two hydroponic greenhouse cultivated red tomato varieties, namely the large round ‘Dometica’ (average diameter: 57 mm) and the small cherry ‘Juanita’ (average diameter: 26 mm). For both varieties, the spectral variance of directional reflectance was well correlated to that of total reflectance. The performances of the PLS prediction models were also similar, with R2 of cross-validation between 0.73 and 0.81. The prediction error, relative to the mean lycopene content of full ripe tomatoes, was similar: i.e. around 16–17% for both varieties and sensors. Our results showed that directional reflectance measured by means of portable, low-cost and compact LED-based sensors can be used with an adequate precision for the non-destructive assessment of lycopene in tomatoes.
Abstract
No abstract has been registered
Authors
Kaishan Song Zhidan Wen Yijun Xu Hong Yang Lili Lyu Ying Zhao Chong Fang Yingxin Shang Jia DuAbstract
Dissolved carbon in lakes play a vital role in the global carbon cycling. The concentration and dynamics of lake dissolved carbon can be influenced by both the surrounding landscape and a combination of physical, chemical and biological processes within the lakes themselves. From 2009 to 2016, we conducted a large-scale assessment of dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC) in 249 lakes across a diverse range of climatic, geopedologic, topographical and hydrological conditions in five Chinese limnetic regions: the East Limnetic Region (ELR), the Northeast Limnetic Region (NLR), the Inner Mongolia-Xinjiang Limnetic Region (MXR), the Yungui Limnetic Region (YGR), and the Tibet-Qinghai Limnetic Region (TQR). We found that the density of the organic matter in the soil in the surrounding landscape plays an important role in the DOC and DIC in lake water, as was evidenced by the high DOC and DIC levels in the NLR, where the soil is respectively organically rich. Conditions in the arid and semi-arid environments (i.e. TQR and MXR) have created a number of brackish/saline lakes and here we found that, DOC and DIC levels (median: 21.79 and 93.72 mg/L, respectively) are significantly higher than those in the freshwater lakes (median: 5.80 and 29.38 mg/L). It also appears to be the case that the trophic state of freshwater lakes influences the spatial variation of DOC. This can be seen in the relationships between DOC and trophic state index (TSI) in agriculturally-dominated regions such as the ELR (R2 = 0.59, p < 0.01), NLR (R2 = 0.65, p < 0.001), and YGR (R2 = 0.78, p < 0.001). Additionally, a close relationship between DOC and DIC can be found in lake waters with different trophic states (eutrophic: slp = 0.63, R2= 0.69; mesotrophic: slp = 1.03, R2 = 0.65; oligotrophic: slp = 1.00, R2 = 0.64). This indicates that human activities influence the quantity and quality of dissolved carbon in inland water across China. This study is able to provide insights regarding the potential effects of climate change and changes in land-use upon the amount of dissolved carbon in lake water.