Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2017
Authors
Gisela Lüscher Thomas Nemecek Michaela Arndorfer Katalin Balázs Peter Dennis Wendy Fjellstad Jürgen Kurt Friedel Gérard Gaillard Felix Herzog Jean-Pierre Sarthou Siyka Stoyanova Sebastian Wolfrum Philippe JeanneretAbstract
Purpose Inclusion of biodiversity as an indicator in the land use impact pathway of Life Cycle Assessment (LCA) is essential to assess the effects of human activities on the environment. Numerous models have been applied, but validations that use actual data, collected in the field, are scarce. Methods The expert system SALCA-BD (Swiss Agricultural LCA—Biodiversity), assigns coefficients for land use class suitability and impact of agricultural practices on species diversity at field and farm scale. We used data on land use classes and agricultural practices from 132 farms located in eight European regions to complete the life cycle inventory. SALCA-BD species diversity scores were calculated for individual fields, aggregated to the farm scale, and compared to field records of arable crop flora, grassland flora, spiders, and wild bees. Results and discussion Overall, species diversity scores from SALCA-BD were positively related to the observed species richness from field survey data. The extent of the relationship diminished from arable crop flora and grassland flora to spiders and to wild bees, and from field to farm scale. Conclusions Validation of a LCA biodiversity assessment tool with data from field surveys revealed the benefit of considering multiple aspects of biodiversity. The appropriate scale for species diversity assessment (as a proxy for biodiversity) is the respective species habitat. Extension of scale increases uncertainty, which should be addressed by developing characterization factors for as detailed a land use classification as possible.
Authors
Isabella Børja Douglas L. Godbold Jan Světlík Nina Elisabeth Nagy Roman Gebauer Josef Urban Daniel Volařík Holger Lange Paal Krokene Petr Čermák Toril Drabløs EldhusetAbstract
Global warming will most likely lead to increased drought stress in forest trees. We wanted to describe the adaptive responses of fine roots and fungal hyphae, at different soil depths, in a Norway spruce stand to long-term drought stress induced by precipitation exclusion over two growing seasons. We used soil cores, minirhizotrons and nylon meshes to estimate growth, biomass and distribution of fine roots and fungal hyphae at different soil depths. In control plots fine roots proliferated in upper soil layers, whereas in drought plots there was no fine root growth in upper soil layers and roots mostly occupied deeper soil layers. Fungal hyphae followed the same pattern as fine roots, with the highest biomass in deeper soil layers in drought plots. We conclude that both fine roots and fungal hyphae respond to long-term drought stress by growing into deeper soil layers.
Authors
G. Gilioli G. Schrader J.-C. Gregoire A. MacLeod O. Mosbach-Schulz Trond Rafoss V. Rossi G. Urek W. van der WerfAbstract
A new method for pest risk assessment and the identification and evaluation of risk-reducing options is currently under development by the European Food Safety Authority (EFSA) Plant Health Panel. The draft method has been tested on pests of concern to the European Union (EU). The method is adaptable and can focus either on all the steps and sub-steps of the assessment process or on specific parts if necessary. It is based on assessing changes in pest population abundance as the major driver of the impact on cultivated plants and on the environment. Like other pest risk assessment systems the method asks questions about the likelihood and magnitude of factors that contribute to risk. Responses can be based on data or expert judgment. Crucially, the approach is quantitative, and it captures uncertainty through the provision by risk assessors of quantile estimates of the probability distributions for the assessed variables and parameters. The assessment is based on comparisons between different scenarios, and the method integrates risk-reducing options where they apply to a scenario, for example current regulation against a scenario where risk-reducing options are not applied. A strategy has been developed to communicate the results of the risk assessment in a clear, comparable and transparent way, with the aim of providing the requestor of the risk assessment with a useful answer to the question(s) posed to the EFSA Plant Health Panel. The method has been applied to four case studies, two fungi, Ceratocystis platani and Cryphonectria parasitica, the nematode Ditylenchus destructor and the Grapevine flavescence dorée phytoplasma. Selected results from these case studies illustrate the types of output that the method can deliver.
Abstract
In fungi, distribution of secondary metabolite (SM) gene clusters is often associated with host- or environment-specific benefits provided by SMs. In the plant pathogen Alternaria brassicicola (Dothideomycetes), the DEP cluster confers an ability to synthesize the SM depudecin, a histone deacetylase inhibitor that contributes weakly to virulence. The DEP cluster includes genes encoding enzymes, a transporter, and a transcription regulator. We investigated the distribution and evolution of the DEP cluster in 585 fungal genomes and found a wide but sporadic distribution among Dothideomycetes, Sordariomycetes, and Eurotiomycetes. We confirmed DEP gene expression and depudecin production in one fungus, Fusarium langsethiae. Phylogenetic analyses suggested 6–10 horizontal gene transfers (HGTs) of the cluster, including a transfer that led to the presence of closely related cluster homologs in Alternaria and Fusarium. The analyses also indicated that HGTs were frequently followed by loss/pseudogenization of one or more DEP genes. Independent cluster inactivation was inferred in at least four fungal classes. Analyses of transitions among functional, pseudogenized, and absent states of DEP genes among Fusarium species suggest enzyme-encoding genes are lost at higher rates than the transporter (DEP3) and regulatory (DEP6) genes. The phenotype of an experimentally-induced DEP3 mutant of Fusarium did not support the hypothesis that selective retention of DEP3 and DEP6 protects fungi from exogenous depudecin. Together, the results suggest that HGT and gene loss have contributed significantly to DEP cluster distribution, and that some DEP genes provide a greater fitness benefit possibly due to a differential tendency to form network connections.
Authors
Line Johansen T. Lennartsson Anna Westin A. Iuga C.M. Ivascu Eveliina Kallioniemi Sølvi WehnAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
Mould growth is an important contributor to colour change of untreated wood exposed outdoors. Predicting the development of mould growth is therefore important to ensure successful use of untreated wood as a façade material. More knowledge about the factors affecting mould growth on outdoor exposed wood is required to give better predictions. In this study, climatic factors and material properties affecting mould growth have been investigated by exposing selected wooden specimens (aspen, pine sapwood, pine heartwood, spruce sapwood and spruce heartwood) to 8 different climates for 91 days. The climates were defined in a factorial design with two levels of relative humidity (65 and 85 %), wetting period (2 and 4 hours per day) and temperature (10 and 25 °C), respectively. The degree of mould growth was visually evaluated once a week during the exposure period. Aspen and pine sapwood were the substrates most susceptible to mould growth. There were no significant differences in susceptibility between pine heartwood and spruce heartwood, but the difference between heartwood and sapwood was significant for both pine and spruce. The effect of density on mould growth was tested for the spruce heartwood material, but was not found to reduce the residual variance significantly. However, all the tested climatic factors affected mould growth significantly; relative humidity was most important, while there was a somewhat smaller effect of wetting period and a minor effect of temperature. Overall, increased RH, longer wetting period and increased temperature had a positive effect on the mould growth. It was found a significant interaction between temperature and relative humidity, indicating that the temperature had larger effect on the mould growth at lower relative humidity, and that the relative humidity had larger effect at lower temperature. There was a tendency that the relative performance of the substrates was dependent on climate, but this interaction effect was not significant for any of the climatic factors.
Authors
Sølvi WehnAbstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Line Johansen T. Lennartsson Anna Westin A. Iuga C.M. Ivascu Eveliina Kallioniemi Sølvi WehnAbstract
No abstract has been registered