Håvard Eikemo
Research Scientist
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Simeon Rossmann Erik Lysøe Monica Skogen Håvard Eikemo Marta Janiszewska Mirella Ludwiczewska Sylwester Sobkowiak Jadwiga Śliwka May Bente BrurbergAbstract
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Abstract
Crown rot, caused by Phytophthora cactorum, is a devastating disease of strawberry. While most commercial octoploid strawberry cultivars (Fragaria × ananassa Duch) are generally susceptible, the diploid species Fragaria vesca is a potential source of resistance genes to P. cactorum. We previously reported several F. vesca genotypes with varying degrees of resistance to P. cactorum. To gain insights into the strawberry defence mechanisms, comparative transcriptome profiles of two resistant genotypes (NCGR1603 and Bukammen) and a susceptible genotype (NCGR1218) of F. vesca were analysed by RNA-Seq after wounding and subsequent inoculation with P. cactorum. Differential gene expression analysis identified several defence-related genes that are highly expressed in the resistant genotypes relative to the susceptible genotype in response to P. cactorum after wounding. These included putative disease resistance (R) genes encoding receptor-like proteins, receptor-like kinases, nucleotide-binding sites, leucine-rich repeat proteins, RPW8-type disease resistance proteins, and ‘pathogenesis-related protein 1’. Seven of these R-genes were expressed only in the resistant genotypes and not in the susceptible genotype, and these appeared to be present only in the genomes of the resistant genotypes, as confirmed by PCR analysis. We previously reported a single major gene locus RPc-1 (Resistance to Phytophthora cactorum 1) in F. vesca that contributed resistance to P. cactorum. Here, we report that 4–5% of the genes (35–38 of ca 800 genes) in the RPc-1 locus are differentially expressed in the resistant genotypes compared to the susceptible genotype after inoculation with P. cactorum. In particular, we identified three defence-related genes encoding wall-associated receptor-like kinase 3, receptor-like protein 12, and non-specific lipid-transfer protein 1-like that were highly expressed in the resistant genotypes compared to the susceptible one. The present study reports several novel candidate disease resistance genes that warrant further investigation for their role in plant defence against P. cactorum.
Authors
Paulina Paluchowska Zhimin Yin Erik Lysøe Simeon Rossmann Mirella Ludwiczewska Marta Janiszewska Sylwester Sobkowiak Håvard Eikemo Monica Skogen May Bente Brurberg Jadwiga ŚliwkaAbstract
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Authors
Simeon Rossmann Erik Lysøe Monica Skogen Håvard Eikemo Marta Janiszewska Mirella Ludwiczewska Sylwester Sobkowiak Jadwiga Śliwka May Bente BrurbergAbstract
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Authors
Britt Puidet Romain Mabon Michele Guibert Riinu Kiiker Kaire Loit Vinh Hong Le Håvard Eikemo Pauline Dewaegeneire Guillaume Saubeau Catherine Chatot Frédérique Aurousseau David E. L. Cooke Alison K. Lees Isaac K. Abuley Jens G. Hansen Roselyne Corbière Melen Leclerc Neda Najdabbasi Didier AndrivonAbstract
Since the mid-2010s, Phytophthora infestans clones that have been dominant in Western Europe from the beginning of the 21st century, for example, EU_13_A2, EU_6_A1 and EU_1_A1, are being replaced by several other emerging clones, including EU_37_A2. The objective of this study was to determine whether the main drivers for the success of EU_37_A2 in Western Europe are associated with decreased fungicide sensitivity, increased virulence and/or aggressiveness. Axenic P. infestans cultures were sampled in the 2016 and 2017 growing seasons from potato crops in France and the United Kingdom. Amongst these, four genotypes were identified: EU_37_A2, EU_13_A2, EU_1_A1 and EU_6_A1. Although a wide range of fluazinam sensitivity was found amongst individual isolates, clonal lines EU_13_A2 and EU_37_A2 showed decreased sensitivity to fluazinam. EU_37_A2 overcame the R5 differential cultivar more often than isolates of EU_1_A1 or EU_6_A1. However, this does not explain the competitive advantage of EU_37_A2 over the virulent EU_13_A2. The fittest genotype, as measured by aggressiveness under controlled conditions, was EU_6_A1, followed by EU_37_A2, EU_13_A2 and then EU_1_A1. EU_37_A2 isolates also showed a shorter latent period than either EU_6_A1 or EU_13_A2, which could favour its long-term persistence. Overall, the data suggest that the emergence of EU_37_A2 in Western Europe was driven by its resistance to a then-major fungicide and shorter generation time. This conclusion is further supported by the fact that EU_37_A2 emergence was slowed by the progressive reduction in the use of fluazinam as a single active ingredient in the years following its initial detection.
Authors
May Bente Brurberg Anupam Gogoi Bikal Ghimire Erik Lysøe Mandeep Poudel Håvard Eikemo Jahn Davik Arne StensvandAbstract
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Anupam Gogoi Bikal Ghimire Erik Lysøe Mandeep Poudel Håvard Eikemo Jahn Davik Arne Stensvand May Bente BrurbergAbstract
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Anupam Gogoi Bikal Ghimire Erik Lysøe Mandeep Poudel Håvard Eikemo Jahn Davik Arne Stensvand May Bente BrurbergAbstract
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Britt Puidet Romain Mabon Michele Guibert Riinu Kiiker Liina Soonvald Vinh Hong Le Håvard Eikemo Pauline Dewaegeneire Guillaume Saubeau Catherine Chatot Frederique Aurousseau David E. L. Cooke Alison K. Lees Isaac K. Abuley Jens G. Hansen Roselyne Corbiere Melen Leclerc Didier AndrivonAbstract
Until recently, genotypes of Phytophthora infestans were regionally distributed in Europe, with populations in western Europe being dominated by clonal lineages and those in northern Europe being genetically diverse because of frequent sexual reproduction. However, since 2013 a new clonal lineage (EU_41_A2) has successfully established itself and expanded in the sexually recombining P. infestans populations of northern Europe. The objective of this study was to study phenotypic traits of the new clonal lineage of P. infestans, which may explain its successful establishment and expansion within sexually recombining populations. Fungicide sensitivity, aggressiveness, and virulence profiles of isolates of EU_41_A2 were analyzed and compared with those of the local sexual populations from Denmark, Norway, and Estonia. None of the phenotypic data obtained from the isolates collected from Denmark, Estonia, and Norway independently explained the invasive success of EU_41_A2 within sexual Nordic populations. Therefore, we hypothesize that the expansion of this new genotype could result from a combination of fitness traits and more favorable environmental conditions that have emerged in response to climate change.
Abstract
Late blight caused by Phytophthora infestans is a serious, worldwide disease on potato (Solanum tuberosum). Phytophthora infestans normally reproduces in a clonal manner, but in some areas, as the Nordic Countries, sexual reproduction has become the major determinant of the population structure. To improve the late blight forecasting in Norway, the process-based Nærstad model was developed. The model includes the structure of the underlying processes in the disease development, including spore production, spore release, spore survival and infection of P. infestans. It needs hourly weather records of air temperature, precipitation, relative humidity, leaf wetness and global radiation. The model contained 19 uncertain parameters, and from a sensitivity analysis, 12 were detected as weakly sensitive to model outputs and fixed to a nominal value within their prior boundaries. The remaining seven parameters were detected as more sensitive to model outputs and were parameterized using maximum a'posteriori (MAP) estimates, calculated through Bayesian calibration. The model was developed based on literature combined with field data of daily observed number of lesions on trap plants of the Bintje cultivar (late blight susceptible) at Ås during the seasons 2006-2008 and 2010-2011. It was further tested on daily observed number of lesions on trap plants of the cultivars Bintje, Saturna (medium susceptible) and Peik (medium resistant) at Ås during the seasons 2012-2015. For all three cultivars, the Nærstad model improved with a higher model accuracy compared to the existing HOSPO-model and the Førsund rules that both have shown relatively good correlation with blight development in field evaluations in Norway. The best accuracy was found for Bintje (0.83) closely followed by Saturna (0.79), whereas a much lower accuracy was detected for Peik (0.66).
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Aims Bacterial decays of onion bulbs have serious economic consequences for growers, but the aetiologies of these diseases are often unclear. We aimed to determine the role of Rahnella, which we commonly isolated from bulbs in the United States and Norway, in onion disease. Methods and Results Isolated bacteria were identified by sequencing of housekeeping genes and/or fatty acid methyl ester analysis. A subset of Rahnella spp. strains was also assessed by multilocus sequence analysis (MLSA); most onion strains belonged to two clades that appear closely related to R. aquatilis. All tested strains from both countries caused mild symptoms in onion bulbs but not leaves. Polymerase chain reaction primers were designed and tested against strains from known species of Rahnella. Amplicons were produced from strains of R. aquatilis, R. victoriana, R. variigena, R. inusitata and R. bruchi, and from one of the two strains of R. woolbedingensis. Conclusions Based on binational testing, strains of Rahnella are commonly associated with onions, and they are capable of causing mild symptoms in bulbs. Significance and Impact of the Study While Rahnella strains are commonly found within field‐grown onions and they are able to cause mild symptoms, the economic impact of Rahnella‐associated symptoms remains unclear.
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Raghuram Badmi Abdelhameed Elameen Håvard Eikemo May Bente Brurberg Carl Gunnar Fossdal Paal Krokene Tage ThorstensenAbstract
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The impact of Delphinella shoot blight (Delphinella abietis) and Grovesiella canker (Grovesiella abieticola) on subalpine (Abies lasiocarpa) and corkbark fir (A. lasiocarpa var. arizonica) in a provenance trial in Idaho (ID) was evaluated in 2013. Both pathogens were previously reported from North America on fir species. D. abietis had been found on subalpine fir in USA, but not in ID, and G. abieticola on grand fir (Abies grandis) in ID, but not on subalpine or corkbark fir. D. abietis kills current-year needles and in severe cases buds and shoots, and G. abieticola results in dead shoots and branches and can eventually kill whole trees. Significant differences between provenances in susceptibility to D. abietis and G. abieticola were observed in the provenance trial in ID. In general, subalpine fir was more susceptible to both diseases than corkbark fir. In 2013, D. abietis was also found on subalpine fir in the Puget Sound area of Washington State and G. abieticola was seen on white fir (Abies concolor), but neither disease was detected in native stands of subalpine fir in Washington State. Morphological features of both fungi were described from samples collected in the provenance trial in ID in May 2016.
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Venche Talgø Jan-Ole Skage Arne Steffenrem Corina Junker Håvard Eikemo May Bente Brurberg Odd Ragnar JohnskåsAbstract
Delphinella shoot blight (Delphinella abietis) attacks true firs (Abies spp.) in Europe and North America. Especially subalpine fir (A. lasiocarpa), one of the main Christmas tree species in Norway, is prone to the disease. The fungus kills current year needles, and in severe cases entire shoots. Dead needles become covered with black fruiting bodies, both pycnidia and pseudothecia. Delphinella shoot blight has mainly been a problem in humid, coastal regions in the northwestern part of Southern Norway, but, probably due to higher precipitation in inland regions during recent years, heavy attacks were found in 2011 in a field trial with 76 provenances of subalpine fir in Southeastern Norway. However, the amount of precipitation seemed less important once the disease had established in the field. Significant differences in susceptibility between provenances were observed. In general, the more bluish the foliage was, the healthier the trees appeared. The analysis of provenance means indicated that, at least for the southern range, the disease ratings were correlated with foliage color. This study also includes isolation, identification, a pathogenicity test, a seed test and electron microscopy of the wax layer on the needles. The fungus was identified based on the morphology of spores and by sequencing the Internal Transcribed Spacer (ITS) regions of the ribosomal DNA. Koch’s postulates were fulfilled. The fungus was found present on newly harvested seeds and may therefore spread via international seed trade. When comparing the wax layers on green and blue needles, those of the latter were significantly thicker, a factor that may be involved in disease resistance.
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The woodland strawberry (Fragaria vesca) has become the model plant for the economically important, but genetically complex, octoploid F. × ananassa. Crown rot caused by the oomycete Phytophthora cactorum is a major problem for the strawberry industry and the identification and incorporation of efficient resistance genes into superior cultivars are important for breeding. In the present study, two experimental populations were used in inoculation experiments under controlled greenhouse condition. Studies of a sparse diallel cross between resistant and susceptible F. vesca genotypes concluded that resistance to crown rot is inherited as a dominant trait under nuclear control. Subsequently, an F2 population derived from the grandparents Bukammen (resistant) and Haugastøl 3 (susceptible) collected in Norway, were phenotyped in infection experiments and genotyped using genotyping-by-sequencing. A 416.2-cM linkage map was constructed, and a single major gene locus was identified on linkage group 6 that we attributed to resistance to Phytopthora infection. We propose to name the resistance locus RPc-1 (Resistance to Phytophthora cactorum 1). Gene prediction of the 3.3 Mb QTL recovered 801 genes of which 69 had a potential role in plant disease resistance.
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Tor-Einar Skog Berit Nordskog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Jan Netland Nina Trandem Trond Rafoss Richard MeadowAbstract
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Tor-Einar Skog Berit Nordskog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Jan Netland Nina Trandem Trond RafossAbstract
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Håvard EikemoAbstract
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Berit Nordskog Tor-Einar Skog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Guro Brodal Jan Netland Nina Trandem Trond RafossAbstract
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Berit Nordskog Tor-Einar Skog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Guro Brodal Jan Netland Nina Trandem Trond RafossAbstract
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Tor-Einar Skog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Jan Netland Nina Trandem Trond Rafoss Richard MeadowAbstract
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Tor-Einar Skog Berit Nordskog Håvard Eikemo Halvard Hole Annette Folkedal Schjøll Jan Netland Nina Trandem Trond Rafoss Richard MeadowAbstract
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Berit Nordskog Jan Netland Håvard Eikemo Halvard Hole Tor-Einar Skog Guro Brodal Annette Folkedal Schjøll Trond RafossAbstract
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Berit Nordskog Jan Netland Håvard Eikemo Halvard Hole Tor-Einar Skog Annette Folkedal Schjøll Guro BrodalAbstract
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In an attempt to find alternative products to classical fungicides, several products with low toxicity were tested against powdery mildew of roses. These products included resistance inducers (Bion, BABA, and ROS), potassium salts (Resistim, monopotassium phosphate), and seed extracts. The best results were obtained with acibenzolar-S-methyl (Bion). The utilization of Bion as prophylactic treatment, watered at a concentration 0.1–0.2 mg/ml, together with good cultural practices can be enough to effectively control powdery mildew on roses. Treatments with Resistim reduced the disease incidence, but not always significantly compared to the controls. None of the other products had effect on powdery mildew.
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Belachew Asalf Tadesse Håvard Eikemo Andrew Dobson Anne-Marte Tronsmo Cecilie Hagen David M. Gadoury Robert C Seem Arne StensvandAbstract
Several non-chemical control agents are now registered and available for control of powdery mildews. However, there is little or no information about their efficacy against strawberry powdery mildew, caused by Podosphera aphanis. Trials were conducted to compare the performance of non-chemical control agents to chemical fungicides under laboratory, greenhouse and high plastic tunnel conditions. The treatments included: AQ10 (active ingredient is Ampelomyces quisqualis, a hyperparasite on powdery mildew), AQ10 + Silwet Gold (organosilicon adjuvant, enhances distribution and wetting), Vacciplant (active ingredient is laminarin, an extract from brown algae), JMS Stylet oil (mineral oil), Rape seed oil + detergent, Thiovit (wettable sulphur), Topas 100 EC (penconazole) + Candit (kresoximmethyl) and water as control. In the greenhouse, one quarter of the recommended dose was used either daily in one experiment or three times per week in another. In the field, half of recommended rates were applied twice weekly. Both in the greenhouse and tunnel experiments, the chemical control Topas + Candit and AQ10 + Silwet Gold significantly reduced disease severity. AQ10,Vacciplant and Thiovit were moderately effective when applied daily in the greenhouse trial, but not significantly different from the water control when applied three time per week in the greenhouse and twice a week in the tunnel experiment. In the plastic tunnel, the JMS stylet oil and Rape seed oil + detergent treatments caused severe phytotoxic reaction (necrosis). AQ10 used alone had the poorest performance in the tunnel. This indicated that the spreader either enhances the effect of AQ10 and/or the spreader itself had an effect. In laboratory experiments with powdery mildew grown on strawberry leaflets in Petri dishes, spore germination after treatments with water, Stylet oil, Candit and Thiovit were 74, 53, 8 and 7%, respectively. The effect of Thiovit found in the laboratory was not reflected in the greenhouse and plastic tunnel trials. We will further explore the protectant, curative and eradicative effects of the compounds included here.
