Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2017
Authors
Peeter Anijalg Simon Y. W. Ho John Davison Marju Keis Egle Tammeleht Katalina Bobowik Igor L. Tumanov Alexander P. Saveljev Elena A. Lyapunova Alexandr A. Vorobiev Nikolai I. Markov Alexey P. Kryukov Ilpo Kojola Jon Swenson Snorre Hagen Hans Geir Eiken Ladislav Paule Urmas SaarmaAbstract
Aim Climatic changes during the Late Pleistocene had major impacts on populations of plant and animal species. Brown bears and other large mammals are likely to have experienced analogous ecological pressures and phylogeographical processes. Here, we address several unresolved issues regarding the Late Pleistocene demography of brown bears: (1) the putative locations of refugia; (2) the direction of migrations across Eurasia and into North America; and (3) parallels with the demographic histories of other wild mammals and modern humans. Location Eurasia and North America. Methods We sequenced 110 complete mitochondrial genomes from Eurasian brown bears and combined these with published sequences from 138 brown bears and 33 polar bears. We used a Bayesian approach to obtain a joint estimate of the phylogeny and evolutionary divergence times. The inferred mutation rate was compared with estimates obtained using two additional methods. Results Bayesian phylogenetic analysis identified seven clades of brown bears, with most individuals belonging to a very large Holarctic clade. Bears from the widespread clade 3a1, which has a distribution from Europe across Asia to Alaska, shared a common ancestor about 45,000 years ago. Main conclusions We suggest that the Altai-Sayan region and Beringia were important Late Pleistocene refuge areas for brown bears and propose large-scale migration scenarios for bears in Eurasia and to North America. We also argue that brown bears and modern humans experienced a demographic standstill in Beringia before colonizing North America.
Authors
Jihong Liu Clarke Lisa Paruch Mihaela-Olivia Dobrica Iuliana Caras Catalin Tucureanu Adrian Onu Sonya Ciulean Crina Stavaru Andre van Eerde Hege Særvold Steen Sissel Haugslien Catalina Petrareanu Catalin Lazar Ioan Popescu Ralph Bock Jean Dubuisson Norica Branza-NichitaAbstract
No abstract has been registered
Authors
Jihong Liu Clarke Lisa Paruch Mihaela-Olivia Dobrica Iuliana Caras Catalin Tucureanu Adrian Onu Sonya Ciulean Crina Stavaru Andre van Eerde Yanliang Wang Hege Særvold Steen Sissel Haugslien Catalina Petrareanu Catalin Lazar Costin-loan Popescu Ralph Bock Jean Dubuisson Norica Branza-NichitaAbstract
The hepatitis C virus (HCV) is a major etiologic agent for severe liver diseases ( e.g . cirrhosis, fibrosis and hepatocellular carcinoma). Approximately 140 million people have chronic HCV infections and about 500 000 die yearly from HCV-related liver pathologies. To date, there is no licensed vaccine available to prevent HCV infection and production of a HCV vaccine remains a major challenge. Here, we report the successful production of the HCV E1E2 heterodimer, an important vaccine candidate, in an edible crop (lettuce, Lactuca s ativa ) using Agrobacterium - mediated transient expression technology. The wild-type dimer (E1E2) and a variant without an N-glycosylation site in the E2 polypeptide (E1E2 Δ N6) were expressed, and appropriate N-glycosylation pattern and functionality of the E1E2 dimers were demonstrated. The humoral immune response induced by the HCV proteins was investigated in mice following oral administration of lettuce antigens with or without previous intramuscular prime with the mammalian HEK293T cell-expressed HCV dimer. Immunization by oral feeding only resulted in development of weak serum levels of anti-HCV IgM for both antigens; however, the E1E2 Δ N6 proteins produced higher amounts of secretory IgA, suggesting improved immunogenic properties of the N-glycosylation mutant. The mice group receiving the intramuscular injection followed by two oral boosts with the lettuce E1E2 dimer developed a systemic but also a mucosal immune response, as demonstrated by the presence of anti-HCV secretory IgA in faeces extracts. In summary, our study demonstrates the feasibility of producing complex viral antigens in lettuce, using plant transient expression technology, with great potential for future low-cost oral vaccine development.
Authors
Inger Martinussen Anne Linn Hykkerud Ivan Paponov Mette Thomsen Eivind Uleberg Laura JaakolaAbstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Florencia A. Yannelli Christiane Koch Jonathan M. Jeschke Johannes KollmannAbstract
Several hypotheses have been proposed to explain biotic resistance of a recipient plant community based on reduced niche opportunities for invasive alien plant species. The limiting similarity hypothesis predicts that invasive species are less likely to establish in communities of species holding similar functional traits. Likewise, Darwin’s naturalization hypothesis states that invasive species closely related to the native community would be less successful. We tested both using the invasive alien Ambrosia artemisiifolia L. and Solidago gigantea Aiton, and grassland species used for ecological restoration in central Europe. We classified all plant species into groups based on functional traits obtained from trait databases and calculated the phylogenetic distance among them. In a greenhouse experiment, we submitted the two invasive species at two propagule pressures to competition with communities of ten native species from the same functional group. In another experiment, they were submitted to pairwise competition with native species selected from each functional group. At the community level, highest suppression for both invasive species was observed at low propagule pressure and not explained by similarity in functional traits. Moreover, suppression decreased asymptotically with increasing phylogenetic distance to species of the native community. When submitted to pairwise competition, suppression for both invasive species was also better explained by phylogenetic distance. Overall, our results support Darwin’s naturalization hypothesis but not the limiting similarity hypothesis based on the selected traits. Biotic resistance of native communities against invasive species at an early stage of establishment is enhanced by competitive traits and phylogenetic relatedness.
Authors
Vlada Vitunskienė Vilija Aleknevičienė Astrida Miceikienė Jonas Čaplikas Vaclovas Miškinis Irina Pilvere Daiva Makutėnienė Vida Dabkienė Vidas Lekavičius Knut Øistad Neringa Ramanauskė Virginija Kargytė Darius Jazepčikas Evaldas Serva Aurelija MarkelytėAbstract
No abstract has been registered
Abstract
To degrade lignocellulose efficiently, lower termites rely on their digestive tract’s specific features (i.e., hysiological properties and enzymes) and on the network of symbiotic fauna harboured in their hindgut. This complex ecosystem, has different levels of symbiosis, and is a result of diverse co-evolutionary events and the singular social behaviour of termites. The partnership between termites and flagellate protists, together with prokaryotes, has been very successful because of their co-adaptative ability and efficacy in resolving the needs of the involved organisms: this tripartite symbiosis may have reached a physiologically stable, though dynamic, evolutionary equilibrium. The diversity of flagellate protists fauna associated with lower termites could be explained by a division of labour to accomplish the intricate process of lignocellulose digestion, and the ability to disrupt this function has potential use for termite control. Multi-level symbiosis strategy processes, or the cellulolytic capacity of flagellate protists, may lead to innovative pathways for other research areas with potential spin-offs for industrial and commercial use.
Authors
Eveliina Kallioniemi Jens Åström Graciela Rusch Sondre Dahle Sandra Charlotte Helene Åström Jan Ove GjershaugAbstract
There is consensus that land-use change is a main driver behind the recent declines of many pollinator populations in Europe. However, it is still not adequately understood how the local resource quality and landscape composition influence pollinators, and if and how the effects vary in space and time. We analysed the influence of landscape- (2 km radius) and local scale- (50 m transects) resources on bumblebee species richness and abundance during two years in South-eastern Norway, where agriculture is highly modernised but landscapes still show limited spatial homogenization. Local flower density and species richness were strongly positively associated with bumblebee densities and species richness, but higher landscape-level flower species richness were linked to lower local bumblebee abundances. Early and late mass flowering crops had clear, but contrasting, effects. The total area of early flowering crops had a consistent negative impact on bumblebee density and species richness throughout the season, while late flowering crops had a positive impact in the beginning of the season before their bloom, suggesting a carry-over effect from previous years. The negative effects of early flowering crops could be due to competition of bumblebees with honey-bees, which are widely used in these crops. Bumblebee density and species richness were clearly negatively correlated with the total area of forest and flower-poor land use areas, including grass fields and cereals. In contrast, bumblebees were positively associated with most linear elements in the landscape (especially pasture and cropland verges), except for roads, which negatively affected bumblebee densities, possibly due to increased mortality, since the quality of the flower resources did not differ from other linear elements. Our results show that the quality and the spatial and temporal distribution of flower resources within the landscape are important drivers for bumblebees, but can create counterintuitive distribution patterns depending on the temporal and spatial resolution of the survey. Increasing flower resources in linear elements and the amount of late mass-flowering crops may be viable management measures to improve conditions for bumblebees in moderately intensified landscapes. Bombus Pollinators Linear features Mass-flowering crops Landscape ecology Agricultural landscapes Ecosystem services
Authors
Ryan Bright Edouard Davin Thomas O'Halloran Julia Pongratz Kaiguang Zhao Alessandro CescattiAbstract
Following a land cover and land management change (LCMC), local surface temperature responds to both a change in available energy and a change in the way energy is redistributed by various non-radiative mechanisms. However, the extent to which non-radiative mechanisms contribute to the local direct temperature response for different types of LCMC across the world remains uncertain. Here, we combine extensive records of remote sensing and in situ observation to show that non-radiative mechanisms dominate the local response in most regions for eight of nine common LCMC perturbations. We find that forest cover gains lead to an annual cooling in all regions south of the upper conterminous United States, northern Europe, and Siberia—reinforcing the attractiveness of re-/afforestation as a local mitigation and adaptation measure in these regions. Our results affirm the importance of accounting for non-radiative mechanisms when evaluating local land-based mitigation or adaptation policies.