Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Authors
Stefano Puliti Johannes Breidenbach Johannes Schumacher Marius Hauglin Torgeir Ferdinand KlingenbergAbstract
No abstract has been registered
Authors
Stefano Puliti Marius Hauglin Johannes Breidenbach P. Montesano C.S.R. Neigh Johannes Rahlf Svein Solberg T. F. Klingenberg Rasmus AstrupAbstract
Boreal forests constitute a large portion of the global forest area, yet they are undersampled through field surveys, and only a few remotely sensed data sources provide structural information wall-to-wall throughout the boreal domain. ArcticDEM is a collection of high-resolution (2 m) space-borne stereogrammetric digital surface models (DSM) covering the entire land area north of 60° of latitude. The free-availability of ArcticDEM data offers new possibilities for aboveground biomass mapping (AGB) across boreal forests, and thus it is necessary to evaluate the potential for these data to map AGB over alternative open-data sources (i.e., Sentinel-2). This study was performed over the entire land area of Norway north of 60° of latitude, and the Norwegian national forest inventory (NFI) was used as a source of field data composed of accurately geolocated field plots (n=7710) systematically distributed across the study area. Separate random forest models were fitted using NFI data, and corresponding remotely sensed data consisting of either: i) a canopy height model (ArcticCHM) obtained by subtracting a high-quality digital terrain model (DTM) from the ArcticDEM DSM height values, ii) Sentinel-2 (S2), or iii) a combination of the two (ArcticCHM+S2). Furthermore, we assessed the effect of the forest- and terrain-specific factors on the models’ predictive accuracy. The best model (,i.e., ArcticCHM+S2) explained nearly 60% of the variance of the training set, which translated in the largest accuracy in terms of root mean square error (RMSE=41.4 t ha−1 ). This result highlights the synergy between 3D and multispectral data in AGB modelling. Furthermore, this study showed that despite the importance of ArcticCHM variables, the S2 model performed slightly better than ArcticCHM model. This finding highlights some of the limitations of ArcticDEM, which, despite the unprecedented spatial resolution, is highly heterogeneous due to the blending of multiple acquisitions across different years and seasons. We found that both forest- and terrain-specific characteristics affected the uncertainty of the ArcticCHM+S2 model and concluded that the combined use of ArcticCHM and Sentinel-2 represents a viable solution for AGB mapping across boreal forests. The synergy between the two data sources allowed for a reduction of the saturation effects typical of multispectral data while ensuring the spatial consistency in the output predictions due to the removal of artifacts and data voids present in ArcticCHM data. While the main contribution of this study is to provide the first evidence of the best-case-scenario (i.e., availability of accurate terrain models) that ArcticDEM data can provide for large-scale AGB modelling, it remains critically important for other studies to investigate how ArcticDEM may be used in areas where no DTMs are available as is the case for large portions of the boreal zone.
Authors
Stefano Puliti Marius Hauglin Johannes Breidenbach Paul M. Montesano C.S.R. Neigh Johannes Rahlf Svein Solberg Torgeir Ferdinand Klingenberg Rasmus AstrupAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
Background The age of forest stands is critical information for forest management and conservation, for example for growth modelling, timing of management activities and harvesting, or decisions about protection areas. However, area-wide information about forest stand age often does not exist. In this study, we developed regression models for large-scale area-wide prediction of age in Norwegian forests. For model development we used more than 4800 plots of the Norwegian National Forest Inventory (NFI) distributed over Norway between latitudes 58° and 65° N in an 18.2 Mha study area. Predictor variables were based on airborne laser scanning (ALS), Sentinel-2, and existing public map data. We performed model validation on an independent data set consisting of 63 spruce stands with known age. Results The best modelling strategy was to fit independent linear regression models to each observed site index (SI) level and using a SI prediction map in the application of the models. The most important predictor variable was an upper percentile of the ALS heights, and root mean squared errors (RMSEs) ranged between 3 and 31 years (6% to 26%) for SI-specific models, and 21 years (25%) on average. Mean deviance (MD) ranged between − 1 and 3 years. The models improved with increasing SI and the RMSEs were largest for low SI stands older than 100 years. Using a mapped SI, which is required for practical applications, RMSE and MD on plot level ranged from 19 to 56 years (29% to 53%), and 5 to 37 years (5% to 31%), respectively. For the validation stands, the RMSE and MD were 12 (22%) and 2 years (3%), respectively. Conclusions Tree height estimated from airborne laser scanning and predicted site index were the most important variables in the models describing age. Overall, we obtained good results, especially for stands with high SI. The models could be considered for practical applications, although we see considerable potential for improvements if better SI maps were available.
Abstract
Laser scanning data from unmanned aerial vehicles (UAV-LS) offer new opportunities to estimate forest growing stock volume ( V ) exclusively based on the UAV-LS data. We propose a method to measure tree attributes and using these measurements to estimate V without the use of field data for calibration. The method consists of five steps: i) Using UAV-LS data, tree crowns are automatically identified and segmented wall-to-wall. ii) From all detected tree crowns, a sample is taken where diameter at breast height (DBH) can be recorded reliably as determined by visual assessment in the UAV-LS data. iii) Another sample of crowns is taken where tree species were identifiable from UAV image data. iv) DBH and tree species models are fit using the samples and applied to all detected tree crowns. v) Single tree volumes are predicted with existing allometric models using predicted species and DBH, and height directly obtained from UAV-LS. The method was applied to a Riegl-VUX data set with an average density of 1130 points m−2 and 3 cm orthomosaic acquired over an 8.8 ha managed boreal forest. The volumes of the identified trees were aggregated to estimate plot-, stand-, and forest-level volumes which were validated using 58 independently measured field plots. The root-mean-square deviance ( RMSD% ) decreased when increasing the spatial scale from the plot (32.2%) to stand (27.1%) and forest level (3.5%). The accuracy of the UAV-LS estimates varied given forest structure and was highest in open pine stands and lowest in dense birch or spruce stands. On the forest level, the estimates based on UAV-LS data were well within the 95% confidence interval of the intense field survey estimate, and both estimates had a similar precision. While the results are encouraging for further use of UAV-LS in the context of fully airborne forest inventories, future studies should confirm our findings in a variety of forest types and conditions.
Abstract
Past: In the early twentieth century, forestry was one of the most important sectors in Norway and an agitated discussion about the perceived decline of forest resources due to over-exploitation was ongoing. To base the discussion on facts, the young state of Norway established Landsskogtakseringen – the world’s first National Forest Inventory (NFI). Field work started in 1919 and was carried out by county. Trees were recorded on 10 m wide strips with 1–5 km interspaces. Site quality and land cover categories were recorded along each strip. Results for the first county were published in 1920, and by 1930 most forests below the coniferous tree line were inventoried. The 2nd to 5th inventories followed in the years 1937–1986. As of 1954, temporary sample plot clusters on a 3 km × 3 km grid were used as sampling units. Present: The current NFI grid was implemented in the 6th NFI from 1986 to 1993, when permanent plots on a 3 km × 3 km grid were established below the coniferous tree line. As of the 7th inventory in 1994, the NFI is continuous, and 1/5 of the plots are measured annually. All trees with a diameter ≥ 5 cm are recorded on circular, 250 m2 plots. The NFI grid was expanded in 2005 to cover alpine regions with 3 km × 9 km and 9 km × 9 km grids. In 2012, the NFI grid within forest reserves was doubled along the cardinal directions. Clustered temporary plots are used periodically to facilitate county-level estimates. As of today, more than 120 variables are recorded in the NFI including bilberry cover, drainage status, deadwood, and forest health. Landuse changes are monitored and trees outside forests are recorded. Future: Considerable research efforts towards the integration of remote sensing technologies enable the publication of the Norwegian Forest Resource Map since 2015, which is also used for small area estimation at the municipality level. On the analysis side, capacity and software for long term growth and yield prognosis are being developed. Furthermore, we foresee the inclusion of further variables for monitoring ecosystem services, and an increasing demand for mapped information. The relatively simple NFI design has proven to be a robust choice for satisfying steadily increasing information needs and concurrently providing consistent time series.
Abstract
In the EU 2020 biodiversity strategy, maintaining and enhancing forest biodiversity is essential. Forest managers and technicians should include biodiversity monitoring as support for sustainible forest management and conservation issues, through the adoption of forest biodiversity indices. The present study investigates the potential of a new type of Structure from Motion (SfM) photogrammetry derived variables for modelling forest structure indicies, which do not require the availability of a digital terrain model (DTM) such as those obtainable from Airborne Laser Scanning (ALS) surveys. The DTM-independent variables were calculated using raw 3D UAV photogrammetric data for modeling eight forest structure indices which are commonly used for forest biodiversity monitoring, namely: basal area (G); quadratic mean diameter (DBHmean); the standard deviation of Diameter at Breast Height (DBHσ); DBH Gini coefficient (Gini); the standard deviation of tree heights (Hσ); dominant tree height (Hdom); Lorey’s height (Hl); and growing stock volume (V). The study included two mixed temperate forestsareas withadifferenttype ofmanagement, with onearea, left unmanagedfor thepast 50years while the other being actively managed. A total of 30 fieldsample plots were measured in the unmanaged forest, and 50 field plots were measured in the actively managed forest. The accuracy of UAV DTM-independent predictions was compared with a benchmark approach based on traditional explanatory variables calculated from ALS data. Finally, DTM-independent variables were used to produce wall-to-wall maps of the forest structure indices in the two test areas and to estimate the mean value and its uncertainty according to a model-assisted regression estimators. DTM-independent variables led to similar predictive accuracy in terms of root mean square error compared to ALS in both study areas for the eight structure indices (DTM-independent average RMSE% = 20.5 and ALS average RMSE% = 19.8). Moreover, we found that the model-assisted estimation, with both DTM-independet and ALS, obtained lower standar errors (SE) compared to the one obtained by modelbased estimation using only field plots. Relative efficiency coefficient (RE) revealed that ALS-based estimates were, on average, more efficient (average RE ALS = 3.7) than DTM-independent, (average RE DTM-independent = 3.3). However, the RE for the DTM-independent models was consistently larger than the one from theALSmodelsfortheDBH-relatedvariables(i.e.G,DBHmean,andDBHσ)andforV.Thishighlightsthepotential of DTM-independent variables, which not only can be used virtually on any forests (i.e., no need of a DTM), but also can produce as precise estimates as those from ALS data for key forest structural variables and substantially improve the efficiency of forest inventories.
Authors
Fatima Heinicke Xiangfu Zhong Karola Manuela Zucknick Johannes Breidenbach Arvind Yegambaram Meenakshi Sundaram Siri Tennebø Flåm Magnus Leithaug Marianne Dalland Simon Rayner Benedicte Alexandra Lie Gregor GilfillanAbstract
High-throughput sequencing has emerged as the favoured method to study microRNA (miRNA) expression, but biases introduced during library preparation have been reported. We recently compared the performance (sensitivity, reliability, titration response and differential expression) of six commercially-available kits on synthetic miRNAs and human RNA, where library preparation was performed by the vendors. We hereby supplement this study with data from two further commonly used kits (NEBNext, NEXTflex) whose manufacturers initially declined to participate. NEXTflex demonstrated the highest sensitivity, which may reflect its use of partially-randomized adapter sequences, but overall performance was lower than the QIAseq and TailorMix kits. NEBNext showed intermediate performance. We reaffirm that biases are kit specific, complicating the comparison of miRNA datasets generated using different kits.
Authors
Steen Magnussen Ronald E. McRoberts Johannes Breidenbach Thomas Nord-Larsen Göran Ståhl Lutz Fehrmann Sebastian SchnellAbstract
Background: Large area forest inventories often use regular grids (with a single random start) of sample locations to ensure a uniform sampling intensity across the space of the surveyed populations. A design-unbiased estimator of variance does not exist for this design. Oftentimes, a quasi-default estimator applicable to simple random sampling (SRS) is used, even if it carries with it the likely risk of overestimating the variance by a practically important margin. To better exploit the precision of systematic sampling we assess the performance of five estimators of variance, including the quasi default. In this study, simulated systematic sampling was applied to artificial populations with contrasting covariance structures and with or without linear trends. We compared the results obtained with the SRS, Matérn’s, successive difference replication, Ripley’s, and D’Orazio’s variance estimators. Results: The variances obtained with the four alternatives to the SRS estimator of variance were strongly correlated, and in all study settings consistently closer to the target design variance than the estimator for SRS. The latter always produced the greatest overestimation. In populations with a near zero spatial autocorrelation, all estimators, performed equally, and delivered estimates close to the actual design variance. Conclusion: Without a linear trend, the SDR and DOR estimators were best with variance estimates more narrowly distributed around the benchmark; yet in terms of the least average absolute deviation, Matérn’s estimator held a narrow lead. With a strong or moderate linear trend, Matérn’s estimator is choice. In large populations, and a low sampling intensity, the performance of the investigated estimators becomes more similar. Keywords: Spatial autocorrelation, Linear trend, Model based, Design biased, Matérn variance, Successive difference replication variance, Geary contiguity coefficient, Random site effects