Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2024
Authors
Binbin Xiang Maciej Wielgosz Theodora Kontogianni Torben Peters Stefano Puliti Rasmus Astrup Konrad SchindlerAbstract
Detailed forest inventories are critical for sustainable and flexible management of forest resources, to conserve various ecosystem services. Modern airborne laser scanners deliver high-density point clouds with great potential for fine-scale forest inventory and analysis, but automatically partitioning those point clouds into meaningful entities like individual trees or tree components remains a challenge. The present study aims to fill this gap and introduces a deep learning framework, termed ForAINet, that is able to perform such a segmentation across diverse forest types and geographic regions. From the segmented data, we then derive relevant biophysical parameters of individual trees as well as stands. The system has been tested on FOR-Instance, a dataset of point clouds that have been acquired in five different countries using surveying drones. The segmentation back-end achieves over 85% F-score for individual trees, respectively over 73% mean IoU across five semantic categories: ground, low vegetation, stems, live branches and dead branches. Building on the segmentation results our pipeline then densely calculates biophysical features of each individual tree (height, crown diameter, crown volume, DBH, and location) and properties per stand (digital terrain model and stand density). Especially crown-related features are in most cases retrieved with high accuracy, whereas the estimates for DBH and location are less reliable, due to the airborne scanning setup.
Abstract
No abstract has been registered
Abstract
Winter storage of seedlings in freezers reduces the amount of heat sum available for growth in the following growing season compared to seedlings stored outdoors. To test the effects of a reduced growing period on the autumn frost hardiness of the six species most used in Icelandic afforestation, seedlings were stored outdoors or in a freezer during winter. In spring, the seedlings were planted on 24 May, 7 June, 21 June, and 5 July, and the frost hardiness of all treatments was tested on 12 and 26 September. In general, the probability of freezing damage increased with a later planting date, with outdoor-stored seedlings having the lowest probability of damage. The timing of frost events was of great importance; the later the freezing date, the less damage was observed. Growth cessation occurred at different times for each species, and they responded differently to the reduced heat sum. Lodgepole pine and birch accumulated the most frost hardiness in September. Sitka spruce had less autumn frost hardiness than Lutz spruce. Hybrid larch accumulated less frost hardiness than Russian larch and was most sensitive to the reduced heat sum. The results can be used to determine which species should be prioritised in frozen storage with regard to Iceland‘s short growing season.
Abstract
Increasing levels of global environmental change may have negative impacts on fertility and embryo viability in animals that could explain a recently reported increase in hatching failure in bird eggs across the globe. Here we test this relationship again by analyzing a dataset containing almost twice as many species and covering a longer time period than earlier works (n = 431 species during the period 1906–2022). We also tested for effects of Red List status and global population size. We found that hatching failure rates in a combined group of bird species currently classified as threatened (IUCN Red List categories Critically Endangered, Endangered and Vulnerable) or Near Threatened, peaked in the late 1970s to early 1980s and thereafter declined. A similar trend also existed in species with relatively small global populations. In contrast, no temporal trends were found in species in the Least Concern category, or in species with large global populations. Moreover, hatching failure rates declined significantly with increasing global population sizes. The temporal peak of hatching failure rates in threatened and Near Threatened species corresponds with the peak in environmental levels of the insecticide DDT. While this could suggest that environmental pollution caused the temporal trends in hatching failure rates, effects of inbreeding in small and threatened populations sampled more frequently during this period could not be excluded. Although we found no evidence suggesting that the rates of hatching failure in bird eggs are increasing, the current study supports previous works showing that species of high conservation concern appear to be more susceptible to factors leading to reproductive failure than other species.
Abstract
No abstract has been registered
Authors
Tor MykingAbstract
No abstract has been registered
Authors
Nga Nguyen Ulrich Bergmann Laura Elina Jaakola Hely Häggman Soile Jokipii-Lukkari Katalin TothAbstract
Bilberry (Vaccinium myrtillus L.) is a wild berry species that is prevalent in northern Europe. It is renowned and well-documented for its nutritional and bioactive properties, especially due to its anthocyanin content. However, an overview of biological systems governing changes in other crucial quality traits, such as size, firmness, and flavours, has received less attention. In the present study, we investigated detailed metabolomic and proteomic profiles at four different ripening stages of bilberry to provide a comprehensive understanding of overall quality during fruit ripening. By integrating omics datasets, we revealed a novel global regulatory network of plant hormones and physiological processes occurring during bilberry ripening. Key physiological processes, such as energy and primary metabolism, strongly correlate with elevated levels of gibberellic acids, jasmonic acid, and salicylic acid in unripe fruits. In contrast, as the fruit ripened, processes including flavour formation, cell wall modification, seed storage, and secondary metabolism became more prominent, and these were associated with increased abscisic acid levels. An indication of the increase in ethylene biosynthesis was detected during bilberry development, raising questions about the classification of non-climacteric and climacteric fruits. Our findings extend the current knowledge on the physiological and biochemical processes occurring during fruit ripening, which can serve as a baseline for studies on both wild and commercially grown berry species. Furthermore, our data may facilitate the optimization of storage conditions and breeding programs, as well as the future exploration of beneficial compounds in berries for new applications in food, cosmetics, and medicines.
Authors
Anna Avetisyan Ivan Gabrielyan Tigran Ghrejyan Mark Kalashian Marine Movsesyan Mane Tadevosyan Amalya Iskandaryan Anne Muola Laura Elina Jaakola Inger MartinussenAbstract
No abstract has been registered
Abstract
The No-till system and organic fertilization combined can be a potential strategy to avoid nutrient leaching, as the soil structure plays a crucial role in retaining them. In this study, we evaluated the influence of different rates of a bio-fertilizer made of industrial organic waste (IOW) from a poultry slaughterhouse on the percolation and stocks of nitrate in disturbed and undisturbed soil samples collected from a subtropical no-till field in southern Brazil. In an incubation experiment, we performed a percolation experiment using lysimeters and simulated rainfall for 180 days and evaluated the remaining soil nitrate stock after the incubation period. We set up a completely randomized experiment with three replicates using four IOW rates (equivalent to 0, 2, 4, and 8 Mg ha−1) and two sample types: disturbed and undisturbed soils. Using the bio-fertilizer increased nitrate mineralization from 0.77 to 1.55 kg ha−1 day−1. Overall, the IOW application increased the amount of percolated nitrate, significantly influenced by the simulated rainfall (p < 0.01). The amount of water flushed through the lysimeters was significantly higher for the disturbed soils (p < 0.05, LSD test), suggesting that the loosened structure promoted a higher water flux. No differences were observed between undisturbed and disturbed samples for nitrate percolation, implying that the amount of nitrate in the liquid soil phase may be a more critical factor in determining nitrate leaching than the water flux. The disturbed samples presented significantly higher nitrate percolation with increasing IOW rates, regardless of precipitation. Stocks in the 0–5 cm depth were 6.6 kg ha−1 higher for undisturbed samples (p < 0.05, LSD test). This result suggests preserving the soil structure can significantly increase the nitrate stocks upon IOW application.
Abstract
Biomethanation represents a promising approach for biomethane production, with biofilm-based processes like trickle bed reactors (TBRs) being among the most efficient solutions. However, maintaining stable performance can be challenging, and both pure and mixed culture approaches have been applied to address this. In this study, inocula enriched with hydrogenotrophic methanogens were introduced to to TBRs as bioaugmentation strategy to assess their impacts on the process performance and microbial community dynamics. Metagenomic analysis revealed a metagenome-assembled genome belonging to the hydrogenotrophic genus Methanobacterium, which became dominant during enrichment and successfully colonized the TBR biofilm after bioaugmentation. The TBRs achieved a biogas production with > 96 % methane. The bioaugmented reactor consumed additional H2. This may be due to microbial species utilizing CO2 and H2 via various CO2 reduction pathways. Overall, implementing bioaugmentation in TBRs showed potential for establishing targeted species, although challenges remain in managing H2 consumption and optimizing microbial interactions.