Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Stefano Puliti Grant Pearse Peter Surovy Luke Wallace Markus Hollaus Maciej Wielgosz Rasmus AstrupAbstract
The challenge of accurately segmenting individual trees from laser scanning data hinders the assessment of crucial tree parameters necessary for effective forest management, impacting many downstream applications. While dense laser scanning offers detailed 3D representations, automating the segmentation of trees and their structures from point clouds remains difficult. The lack of suitable benchmark datasets and reliance on small datasets have limited method development. The emergence of deep learning models exacerbates the need for standardized benchmarks. Addressing these gaps, the FOR-instance data represent a novel benchmarking dataset to enhance forest measurement using dense airborne laser scanning data, aiding researchers in advancing segmentation methods for forested 3D scenes. In this repository, users will find forest laser scanning point clouds from unamnned aerial vehicle (using Riegl sensors) that are manually segmented according to the individual trees (1130 trees) and semantic classes. The point clouds are subdivided into five data collections representing different forests in Norway, the Czech Republic, Austria, New Zealand, and Australia. These data are meant to be used either for developement of new methods (using the dev data) or for testing of exisitng methods (test data). The data splits are provided in the data_split_metadata.csv file. A full description of the FOR-instance data can be found at http://arxiv.org/abs/2309.01279
Authors
Stefano Puliti Grant Pearse Peter Surovy Luke Wallace Markus Hollaus Maciej Wielgosz Rasmus AstrupAbstract
The FOR-instance dataset (available at this https URL) addresses the challenge of accurate individual tree segmentation from laser scanning data, crucial for understanding forest ecosystems and sustainable management. Despite the growing need for detailed tree data, automating segmentation and tracking scientific progress remains difficult. Existing methodologies often overfit small datasets and lack comparability, limiting their applicability. Amid the progress triggered by the emergence of deep learning methodologies, standardized benchmarking assumes paramount importance in these research domains. This data paper introduces a benchmarking dataset for dense airborne laser scanning data, aimed at advancing instance and semantic segmentation techniques and promoting progress in 3D forest scene segmentation. The FOR-instance dataset comprises five curated and ML-ready UAV-based laser scanning data collections from diverse global locations, representing various forest types. The laser scanning data were manually annotated into individual trees (instances) and different semantic classes (e.g. stem, woody branches, live branches, terrain, low vegetation). The dataset is divided into development and test subsets, enabling method advancement and evaluation, with specific guidelines for utilization. It supports instance and semantic segmentation, offering adaptability to deep learning frameworks and diverse segmentation strategies, while the inclusion of diameter at breast height data expands its utility to the measurement of a classic tree variable. In conclusion, the FOR-instance dataset contributes to filling a gap in the 3D forest research, enhancing the development and benchmarking of segmentation algorithms for dense airborne laser scanning data.
Abstract
No abstract has been registered
Abstract
Information on tree height-growth dynamics is essential for optimizing forest management and wood procurement. Although methods to derive information on height-growth information from multi-temporal laser scanning data already exist, there is no method to derive such information from data acquired at a single point in time. Drone laser scanning data (unmanned aerial vehicles, UAV-LS) allows for the efficient collection of very dense point clouds, creating new opportunities to measure tree and branch architecture. In this study, we examine if it is possible to measure the vertical positions of branch whorls, which correspond to nodes, and thus can in turn be used to trace the height growth of individual trees. We propose a method to measure the vertical positions of whorls based on a single-acquisition of UAV-LS data coupled with deep-learning techniques. First, single-tree point clouds were converted into 2D image projections, and a YOLOv5 (you-only-look-once) convolutional neural network was trained to detect whorls based on a sample of manually annotated images. Second, the trained whorl detector was applied to a set of 39 trees that were destructively sampled after the UAV-LS data acquisition. The detected whorls were then used to estimate tree-, plot- and stand-level height-growth trajectories. The results indicated that 70 per cent (i.e. precision) of the measured whorls were correctly detected and that 63 per cent (i.e. recall) of the detected whorls were true whorls. These results translated into an overall root-mean-squared error and Bias of 8 and −5 cm for the estimated mean annual height increment. The method’s performance was consistent throughout the height of the trees and independent of tree size. As a use case, we demonstrate the possibility of developing a height-age curve, such as those that could be used for forecasting site productivity. Overall, this study provides proof of concept for new methods to analyse dense aerial point clouds based on image-based deep-learning techniques and demonstrates the potential for deriving useful analytics for forest management purposes at operationally-relevant spatial-scales.
Abstract
Accurate estimation of site productivity is essential for forest projections and scenario modelling. We present and evaluate models to predict site index (SI) and whether a site is productive (potential total stem volume production ≥ 1 m3·ha−1·year−1) in a wall-to-wall high-resolution (16 m × 16 m) SI map for Norway. We investigate whether remotely sensed data improve predictions. We also study the advantages and disadvantages of using boosted regression trees (BRT), a machine-learning algorithm, to create high-accuracy SI maps. We use climatic and topographical data, soil parent material, a land resource map, and depth to water, together with Sentinel-2 satellite images and airborne laser scanning metrics, as predictor variables. We use the SI observed at more than 10 000 National Forest Inventory (NFI) sample plots throughout Norway to fit BRT models and validate the models using 5822 independent temporary plots from the NFI. We benchmark our results against SI estimates from forest monitoring inventories. We find that the SI from BRT has root mean squared error (RMSE) ranging from 2.3 m (hardwoods) to 3.6 m (spruce) when tested against independent validation data from the NFI temporary plots. These RMSEs are similar or marginally better than an evaluation of SI estimates from operational forest management plans where SI normally stems from manual photo interpretation.
Authors
Inger Martinussen Mathias Amundsen Aksel Granhus Antje Gonera Marius Hauglin Anne Linn Hykkerud Laura Jaakola Mikko Kurttila Jari Miina Rainer Peltola Gesine Schmidt Josefine Skaret Baoru Yang Kjersti AabyAbstract
Almost 95% of the area in Norway is wilderness and 38% of the land area is covered by woods. These areas are abundant in valuable renewable resources, including wild berries. In our neighbouring countries, Sweden and Finland, wild berries are already a big industry. At the same time, on the market the Norwegian wild berries are almost non-existent and berries are left unexploited. Lingonberry (Vaccinium vitis-idaea) is one of the most abundant and economically important wild berries in the Nordic countries. Nevertheless, lingonberry has a large untapped potential due to its unique health effects and potential for increased value creation. It is estimated that 111,500 t of lingonberry are produced in the Norwegian woods. Norway is a long and diverse country with a range of climatic conditions. Adaptations to different conditions can give differences in both yield and quality of wild berries. Yields vary enormously from year to year and among different locations. A steady supply, predictable volumes and high quality are vital for successful commercialization of wild berries. To increase the utilization of berries, there is a need for increased knowledge regarding availability and quality variation of the berries. In addition, the Norwegian market suffers from high labour costs and cannot compete in product price. Innovative solutions and new knowledge on quality aspects can open possibilities for value creation. Toward achieving this goal, we have created a project called “WildBerries”, the main objective of which is to produce research-based knowledge that will create the basis for increased commercial utilization of Norwegian wild berries.
Abstract
No abstract has been registered
Abstract
Inthis study, we introduce Point2Tree, a modular and versatile framework that employs a three-tiered methodology, inclusive of semantic segmentation, instance segmentation, and hyperparameter optimization analysis, designed to process laser point clouds in forestry. The semantic segmentation stage is built upon the Pointnet++ architecture and is primarily tasked with categorizing each point in the point cloud into meaningful groups or ’segments’, specifically in this context, differentiating between diverse tree parts, i.e., vegetation, stems, and coarse woody debris. The category for the ground is also provided. Semantic segmentation achieved an F1-score of 0.92, showing a high level of accuracy in classifying forest elements. In the instance segmentation stage, we further refine this process by identifying each tree as a unique entity. This process, which uses a graph-based approach, yielded an F1-score of approximately 0.6, signifying reasonable performance in delineating individual trees. The third stage involves a hyperparameter optimization analysis, conducted through a Bayesian strategy, which led to performance improvement of the overall framework by around four percentage points. Point2Tree was tested on two datasets, one from a managed boreal coniferous forest in Våler, Norway, with 16 plots chosen to cover a range of forest conditions. The modular design of the framework allows it to handle diverse pointcloud densities and types of terrestrial laser scanning data.
Abstract
Sustainable forest management systems require operational measures to preserve the functional design of forest roads. Frequent road data collection and analysis are essential to support target-oriented and efficient maintenance planning and operations. This study demonstrates an automated solution for monitoring forest road surface deterioration using consumer-grade optical sensors. A YOLOv5 model with StrongSORT tracking was adapted and trained to detect and track potholes in the videos captured by vehicle-mounted cameras. For model training, datasets recorded in diverse geographical regions under different weather conditions were used. The model shows a detection and tracking performance of up to a precision and recall level of 0.79 and 0.58, respectively, with 0.70 mean average precision at an intersection over union (IoU) of at least 0.5. We applied the trained model to a forest road in southern Norway, recorded with a Global Navigation Satellite System (GNSS)−fitted dashcam. GNSS-delivered geographical coordinates at 10 Hz rate were used to geolocate the detected potholes. The geolocation performance over this exemple road stretch of 1 km exhibited a root mean square deviation of about 9.7 m compared to OpenStreetMap. Finally, an exemple road deterioration map was compiled, which can be used for scheduling road maintenance operations.
Authors
Risto Päivinen Rasmus Astrup Richard A. Birdsey Johannes Breidenbach Jonas Fridman Annika Kangas Pekka E. Kauppi Michael Köhl Kari T. Korhonen Vivian Kvist Johannsen François Morneau Thomas Riedel Klemens Schadauer Iddo K. WernickAbstract
No abstract has been registered