Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2018
Sammendrag
Fusarium head blight and seedling blight, both caused by Fusarium spp. and Microdochium spp., and glume blotch caused by Parastagonospora nodorum, are important diseases in wheat. In Norway, wheat seed lots are routinely analysed for infestation by these pathogens using traditional methods (plating grain on PDA, recording presence or absence of fungal colonies). This method is time consuming, require knowledge within fungal morphology, and do not facilitate identification to species in all cases. Molecular methods such as quantitative PCR (qPCR) could allow detection and quantification of fungal DNA at the species level in a relatively time effective way, particularly since the method allows for automation in different steps such as DNA extraction and pipetting. Whether the latter method is suitable within seed health evaluations will depend on the relationship between the amount of DNA of the different fungal species and field performance, and the purpose of the test (evaluation of planting value, need for seed treatment, survey of fungal species, quality of grain for consumption etc). To compare the two different methods, about 150 spring wheat seed lots from the years 2016-2017 (including two cultivars) were selected for the analysis of different fungi using species-specific qPCR and compared with the results from routine testing on PDA. In the 2016 material (81 samples), a mean seed infestation rate of 26% was observed for Microdochium spp. in the PDA test. The level of Fusarium was lower (mean infestation rate of 5%). A strong relationship was observed between the percentage of seeds infested by Microdochium and the level of Microdochium DNA (sum of DNA from Microdochium majus and Microdochium nivale) quantified by qPCR (R2 of 0.76, p<0.01). The relationship between Fusarium infested seeds and the level of Fusarium DNA (sum of DNA from three species) was moderate (R2 of 0.33, p<0.01). The samples were also analysed for the presence of P. nodorum. Compared to Fusarium and Microdochium, P. nodorum was present at an intermediate level (mean infestation rate of 12%). The relationship between the two different methods was weaker for this fungus (R2 of 0.21, p<0.01) than for Fusarium and Microdochium. The relationship between germination capacity and rating of the three groups of fungi by either method was studied. Preliminary results suggest that of the three fungi, Microdochium was associated with germination capacity in the 2016 material, and that the Microdochium infestation rate on PDA was slightly better correlated to germination capacity than the level of Microdochium DNA. Further results will be presented at the conference, including the association between the relative DNA content of the different Microdochium and Fusarium species and seed germination.
Poster – Microalgae: Active ingredients in brewing
Giorgia Carnovale, Kari Skjånes, Stig A. Borgvang
Sammendrag
No abstract has been registered
Forfattere
Maria Hayes Leen Bastiaens Luisa Gouveia Spyros Gkelis Hanne Skomedal Kari Skjånes Patrick Murray Marco García-Vaquero Muge Isleten Hosoglu John Dodd Despoina Konstantinou Ivo Safarik Graziella Chini Zittelli Vytas Rimkus Victόria del Pino Koenraad Muylaert Christine Edwards Morten Laake Joana Gabriela Laranjeira da Silva Hugo Pereira Joana AbelhoSammendrag
No abstract has been registered
Forfattere
Daniel Girma Mulat Janka Dibdiakova Svein Jarle HornSammendrag
Background: The emerging cellulosic bioethanol industry will generate huge amounts of lignin-rich residues that may be converted into biogas by anaerobic digestion (AD) to increase the output of energy carriers from the biorefnery plants. The carbohydrates fraction of lignocellulosic biomass is degradable, whereas the lignin fraction is generally considered difcult to degrade during AD. The objective of this study was to investigate the feasibility of biogas production by AD from hydrolysis lignin (HL), prepared by steam explosion (SE) and enzymatic saccharifcation of birch. A novel nylon bag technique together with two-dimensional nuclear magnetic resonance spectroscopy, pyrolysis–gas chromatography–mass spectrometry (Py-GC/MS), and Fourier transform infrared (FTIR) spectroscopy was used to identify recalcitrant and degradable structures in the lignin during AD. Results: The HL had a lignin content of 80% which included pseudo-lignin and condensed-lignin structures resulting from the SE pretreatment. The obtained methane yield from HL was almost twofold higher than the theoretical methane from the carbohydrate fraction alone, indicating that part of the lignin was converted to methane. Characterization of the undegradable material after AD revealed a substantial loss of signals characteristic for carbohydrates and lignin–carbohydrate complexes (LCC), indicating conversion of these chemical components to methane during AD. The β-O-4′ linkage and resinol were not modifed as such in AD, but major change was seen for the S/G ratio from 5.8 to 2.6, phenylcoumaran from 4.9 to 1.0%, and pseudo-lignin and condensed-lignin were clearly degraded. Scanning electron microscopy and simultaneous thermal analysis measurements demonstrated changes in morphology and thermal properties following SE pretreatment and AD. Our results showed that carbohydrate, LCC, pseudo-lignin, and condensed-lignin degradation had contributed to methane production. The energy yield for the combined ethanol production and biogas production was 8.1 MJ fuel per kg DM of substrate (4.9 MJ/kg from ethanol and 3.2 MJ/kg from methane). Conclusion: This study shows the beneft of using a novel bag technique together with advanced analytical techniques to investigate the degradation mechanisms of lignin during AD, and also points to a possible application of HL produced in cellulosic bioethanol plants.
Forfattere
Mekjell Meland Mirsad Kurtovic Belma Kalamujic Naris Pojskic Lejla Lasic Fuad GasiSammendrag
Due to their Mendelian inheritance, microsatellites or SSRs (simple sequence repeats) can readily be used for parentage analyses of pear seedlings, thus revealing the female and male parents of the plant. However, in cases where obtained pear seeds display low viability, conducting a parentage analyses on the pear seeds themselves could be used in order to identify the male parent (successful pollinator). In this study, batches of seeds were extracted from fruits of the triploid ‘Ingeborg’ pear (‘Conference’ × ‘Bonne Louise’), the main commercial pear cultivar in Norway. Mature pears were collected from eight commercial pear orchards located in Ullensvang, at 60° North and seeds were collected. Genomic DNA was subsequently isolated from the obtained seed batches and genotyped using 12 microsatellite markers. The same markers were also used for the genetic characterization of ‘Ingeborg’ and five pear genotypes used as pollinators in the sampled orchards (‘Clara Frijs’, ‘Herzogine Elsa’, ‘Anna’, ‘Colorée de Juillet’ and ‘Belle lucrative’). The obtained SSR profiles were used in paternity analyses, as well as for gene assignment analyses. Both approaches identified pear ‘Clara Frijs’ to be the most successful pollinator in most of the sampled orchards. Subsequent S allele genotyping of ‘Ingeborg’ and five pear genotypes used as pollinators in the sampled orchards revealed that the preferential pollination by individual genotypes was not caused by gametophytic incompatibility or semi-compatibility.
Forfattere
Adam O'Toole Christophe Moni Simon Weldon Anne Schols Monique Carnol Bernard Bosman Daniel RasseSammendrag
The application of biochar to soils is a promising technique for increasing soil organic C and offsetting GHG emissions. However, large-scale adoption by farmers will likely require the proof of its utility to improve plant growth and soil quality. In this context, we conducted a four-year field experiment between October 2010 to October 2014 on a fertile silty clay loam Albeluvisol in Norway to assess the impact of biochar on soil physical properties, soil microbial biomass, and oat and barley yield. The following treatments were included: Control (soil), miscanthus biochar 8 t C ha1 (BC8), miscanthus straw feedstock 8 t C ha1 (MC8), and miscanthus biochar 25 t C ha1 (BC25). Average volumetric water content at field capacity was significantly higher in BC25 when compared to the control due to changes in BD and total porosity. The biochar amendment had no effect on soil aggregate (2–6 mm) stability, pore size distribution, penetration resistance, soil microbial biomass C and N, and basal respiration. Biochar did not alter crop yields of oat and barley during the four growing seasons. In order to realize biochar’s climate mitigation potential, we suggest future research and development efforts should focus on improving the agronomic utility of biochar in engineered fertilizer and soil amendment products.
Sammendrag
The awareness of sediment and nutrient loss from non-point sources are of increasing environmental concern as measures to reduce point source inputs to surface waters have been introduced. Mitigation efforts to reduce loss of particles and nutrients from agriculture in Norway and other countries have mainly focused on surface runoff, whereas sub-surface drainage has received little attention. However, research has shown that the sub-surface field drains are transporting both sediment and nutrients rapidly to the watercourses. Despite these established facts there has been little development of measures to reduce these losses. This article describes how Lightweight Aggregates (LWA), Leca®, can mitigate some of the environmental challenges connected to sub-surface field drains. A field experimental project was performed to assess the effects on drainage water quality hydrological performance and functionality of drainage systems based on Lightweight Aggregates compared to traditional pipe drains. Registrations of the performance of the systems were done in two separate periods, 1992–1993 and 1999–2000. After 2000 no measurement programme has run. The functionality of the drainage systems was registered in connection to ordinary farming activity. In 1999–2000 LWA drains showed particularly good performance with regard to reducing the content of Phosphorus, 40–90 % reduction in Total-P. The drainage water from the LWA drains contained less than half the amount of suspended solids compared to traditional pipe drains. The results from 1993 showed no significant difference between LWA drains and pipe drains with respect to Nitrogen. The results from 1999/2000 showed higher loss of Nitrogen through pipe drains with no envelope compared to all other systems. LWA drains may be particularly useful in reducing particles and nutrient loads from cultivated flat drained areas adjacent to environmentally sensitive and ecologically important water ecosystems. Further investigations are recommended to optimise the design of LWA drains.
Forfattere
Anna Bucharova Oliver Bossdorf Norbert Hölzel Johannes Kollmann Rüdiger Prasse Walter DurkaSammendrag
One of the main questions in ecosystem restoration is where to obtain the seeds to re-establish plant communities. While the most commonly advocated approach is to use seeds from local sources, some experts argue against this because local populations may harbour little genetic variability for the restored populations to be able to adapt to and survive global change. Instead, they propose alternative strategies such as mixing seeds from various sources to increase genetic variability and adaptive potential, or using seeds from populations that have a similar climate as predicted for the target locality in the future. All these alternative seed-sourcing strategies have in common that they involve a transplanting of plant ecotypes, sometimes over large spatial scales. This is risky because plants from distant origins may be maladapted to the current local abiotic and biotic environment. In addition, introduction of non-local provenances will disrupt natural patterns of withinspecies biodiversity and will affect ecological networks, with unpredictable consequences. To balance the value of local adaptation with the need for future adaptation potential, we propose ‘regional admixture provenancing’ as a compromise strategy. Here seeds are sourced from multiple populations within the same region as the target locality and mixed prior to use. The mixing of seeds will increase the genetic diversity necessary for future adaptation, while restricting seed origins to a regional scale will maintain regional adaptation and reduce the risk of unintended effects on other biota. This approach is feasible in practice and has recently been implemented in Germany. We believe that it represents a compromise to reconcile opposing views on ecological restoration.
Forfattere
Svetlana Pakhomova Evgeniy Yakushev Elizaveta Protsenko Sylvain Rigaud Daniel Cossa Joel Knoery Raoul-Marie Couture Olivier Radakovitch Shamil Yakubov Dominika Krzeminska Alice NewtonSammendrag
This study presents a specifically designed Mercury module in a coupled benthic-pelagic reactive-transport model - Bottom RedOx Model (BROM) that allows to study mercury (Hg) biogeochemistry under different conditions. This module considers the transformation of elemental mercury (Hg(0)), divalent mercury (Hg(II)) and methylmercury (MeHg). The behavior of mercury species in the model is interconnected with changes of oxygen, hydrogen sulfide, iron oxides, organic matter, and biota. We simulated the transformation and transport of Hg species in the water column and upper sediment layer under five different scenarios, combining various levels of oxygenation and trophic state in the Berre lagoon, a shallow eutrophic lagoon of the French Mediterranean coast subjected to seasonal anoxia. The first scenario represents the conditions in the lagoon that are compared with experimental data. The four other scenarios were produced by varying the biological productivity, using low and high nutrient (N and P) concentrations, and by varying the redox conditions using different intensity of vertical mixing in the water column. The results of the simulation show that both oxidized and reduced sediments can accumulate Hg, but any shifts in redox conditions in bottom water and upper sediment layer lead to the release of Hg species into the water column. Eutrophication and/or restricted vertical mixing lead to reducing conditions and intensify MeHg formation in the sediment with periodic release to the water column. Oxygenation of an anoxic water body can lead to the appearance of Hg species in the water column and uptake by organisms, whereby Hg may enter into the food web. The comparison of studied scenarios shows that a well-oxygenated eutrophic system favors the conditions for Hg species bioaccumulation with a potential adverse effect on the ecosystem. The research is relevant to the UN Minimata convention, EU policies on water, environmental quality standards and Mercury in particular.
Forfattere
Panu Korhonen Taru Palosuo Tomas Persson Mats Höglind Guillaume Jégo Marcel Van Oijen Anne-Maj Gustavsson Gilles Bélanger Perttu VirkajärviSammendrag
During the past few years, several studies have compared the performance of crop simulation models to assess the uncertainties in model-based climate change impact assessments and other modelling studies. Many of these studies have concentrated on cereal crops, while fewer model comparisons have been conducted for grasses. We compared the predictions for timothy grass (Phleum pratense L.) yields for first and second cuts along with the dynamics of above-ground biomass for the grass simulation models BASGRA and CATIMO, and the soil-crop model STICS. The models were calibrated and evaluated using field data from seven sites across Northern Europe and Canada with different climates, soil conditions and management practices. Altogether the models were compared using data on timothy grass from 33 combinations of sites, cultivars and management regimes. Model performances with two calibration approaches, cultivar-specific and generic calibrations, were compared. All the models studied estimated the dynamics of above-ground biomass and the leaf area index satisfactorily, but tended to underestimate the first cut yield. Cultivar-specific calibration resulted in more accurate first cut yield predictions than the generic calibration achieving root mean square errors approximately one third lower for the cultivar-specific calibration. For the second cut, the difference between the calibration methods was small. The results indicate that detailed soil process descriptions improved the overall model performance and the model responses to management, such as nitrogen applications. The results also suggest that taking the genetic variability into account between cultivars of timothy grass also improves the yield estimates. Calibrations using both spring and summer growth data simultaneously revealed that processes determining the growth in these two periods require further attention in model development.