Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Authors
Stefano Puliti Johannes Breidenbach Johannes Schumacher Marius Hauglin Torgeir Ferdinand Klingenberg Rasmus AstrupAbstract
This study aimed at estimating total forest above-ground net change (ΔAGB; Gg) over five years (2014–2019) based on model-assisted estimation utilizing freely available satellite imagery. The study was conducted for a boreal forest area (approx. 1.4 Mha) in Norway where bi-temporal national forest inventory (NFI), Sentinel-2, and Landsat data were available. Biomass change was modelled based on a direct approach. The precision of estimates using only the NFI data in a basic expansion estimator was compared to four different alternative model-assisted estimates using 1) Sentinel-2 or Landsat data, and 2) using bi- or uni-temporal remotely sensed data. We found that spaceborne optical data improved the precision of the purely field-based estimates by a factor of up to three. The most precise estimates were found for the model-assisted estimation using bi-temporal Sentinel-2 (standard error; SE = 1.7 Gg). However, the decrease in precision when using Landsat data was small (SE = 1.92 Gg). We also found that ΔAGB could be precisely estimated when remotely sensed data were available only at the end of the monitoring period. We conclude that satellite optical data can considerably improve ΔAGB estimates, when repeated and coincident field data are available. The free availability, global coverage, frequent update, and long-term time horizon make data from programs such as Sentinel-2 and Landsat a valuable data source for consistent and durable monitoring of forest carbon dynamics.
Abstract
Key message Large-scale forest resource maps based on national forest inventory (NFI) data and airborne laser scanning may facilitate synergies between NFIs and forest management inventories (FMIs). A comparison of models used in such a NFI-based map and a FMI indicate that NFI-based maps can directly be used in FMIs to estimate timber volume of mature spruce forests. Context Traditionally, FMIs and NFIs have been separate activities. The increasing availability of detailed NFI-based forest resource maps provides the possibility to eliminate or reduce the need of field sample plot measurements in FMIs if their accuracy is similar. Aims We aim to (1) compare a timber volume model used in a NFI-based map and models used in a FMI, and (2) evaluate utilizing additional local sample plots in the model of the NFI-based map. Methods Accuracies of timber volume estimates using models from an existing NFI-based map and a FMI were compared at plot and stand level. Results Estimates from the NFI-based map were similar to or more accurate than the FMI. The addition of local plots to the modeling data did not clearly improve the model of the NFI-based map. Conclusion The comparison indicates that NFI-based maps can directly be used in FMIs for timber volume estimation in mature spruce stands, leading to potentially large cost savings.
Abstract
Butt rot (BR) damage of a tree results from a decay caused by a pathogenic fungus. BR damages associated with Norway spruce (Picea abies [L.] Karst.) account for considerable economic losses in timber production across the northern hemisphere. While information on BR damages is critical for optimal decision-making in forest management, maps of BR damages are typically lacking in forest information systems. Timber volume damaged by BR was predicted at the stand-level in Norway using harvester information of 186,026 stems (clear-cuts), remotely sensed, and environmental data (e.g. climate and terrain characteristics). This study utilized Random Forests models with two sets of predictor variables: (1) predictor variables available after harvest (theoretical case) and (2) predictor variables available prior to harvest (mapping case). Our findings showed that forest attributes characterizing the maturity of forest, such as remote sensing-based height, harvested timber volume and quadratic mean diameter at breast height, were among the most important predictor variables. Remotely sensed predictor variables obtained from airborne laser scanning data and Sentinel-2 imagery were more important than the environmental variables. The theoretical case with a leave-stand-out cross-validation resulted in an RMSE of 11.4 m3 · ha−1 (pseudo-R2: 0.66) whereas the mapping case resulted in a pseudo-R2 of 0.60. When spatially distinct clusters of harvested forest stands were used as units in the cross-validation, the RMSE value and pseudo-R2 associated with the mapping case were 15.6 m3 · ha−1 and 0.37, respectively. The findings associated with the different cross-validation schemes indicated that the knowledge about the BR status of spatially close stands is of high importance for obtaining satisfactory error rates in the mapping of BR damages.
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Fatima Heinicke Xiangfu Zhong Siri Tennebø Flåm Johannes Breidenbach Magnus Leithaug Marthe Thoresen Mæhlen Siri Lillegraven Anna-Birgitte Aga Ellen Sauar Norli Maria Dahl Mjaavatten Espen Andre Haavardsholm Manuela Zucknick Simon Rayner Benedicte Alexandra LieAbstract
Rheumatoid arthritis (RA) is a complex disease with a wide range of underlying susceptibility factors. Recently, dysregulation of microRNAs (miRNAs) in RA have been reported in several immune cell types from blood. However, B cells have not been studied in detail yet. Given the autoimmune nature of RA with the presence of autoantibodies, CD19+ B cells are a key cell type in RA pathogenesis and alterations in CD19+ B cell subpopulations have been observed in patient blood. Therefore, we aimed to reveal the global miRNA repertoire and to analyze miRNA expression profile differences in homogenous RA patient phenotypes in blood-derived CD19+ B cells. Small RNA sequencing was performed on CD19+ B cells of newly diagnosed untreated RA patients (n=10), successfully methotrexate (MTX) treated RA patients in remission (MTX treated RA patients, n=18) and healthy controls (n=9). The majority of miRNAs was detected across all phenotypes. However, significant expression differences between MTX treated RA patients and controls were observed for 27 miRNAs, while no significant differences were seen between the newly diagnosed patients and controls. Several of the differentially expressed miRNAs were previously found to be dysregulated in RA including miR-223-3p, miR-486-3p and miR-23a-3p. MiRNA target enrichment analysis, using the differentially expressed miRNAs and miRNA-target interactions from miRTarBase as input, revealed enriched target genes known to play important roles in B cell activation, differentiation and B cell receptor signaling, such as STAT3, PRDM1 and PTEN. Interestingly, many of those genes showed a high degree of correlated expression in CD19+ B cells in contrast to other immune cell types. Our results suggest important regulatory functions of miRNAs in blood-derived CD19+ B cells of MTX treated RA patients and motivate for future studies investigating the interactive mechanisms between miRNA and gene targets, as well as the possible predictive power of miRNAs for RA treatment response.
Authors
Stefano Puliti Grant D. Pearse Michael S. Watt Edward Mitchard Ian McNicol Magnus Bremer Martin Rutzinger Peter Surovy Luke Wallace Markus Hollaus Rasmus AstrupAbstract
Survey-grade laser scanners suitable for drones (UAV-LS) allow the efficient collection of finely detailed three-dimensional (3D) information on tree structures allowing to resolve the complexity of the forest into discrete individual trees and species as well as into different component of the tree. Current developments are hindered by the limited availability of survey-grade UAV-LS data and by the lack of a publicly available benchmark dataset for developing and validating methods. We present a new benchmarking dataset composed of manually labelled UAV-LS data covering forests in different continents and eco-regions. Such data consists in single-tree point clouds, with each point classified as either stem, branches, and leaves. This benchmark dataset offers new possibilities to develop single-tree segmentation algorithms and validate existing ones.
Authors
Stefano Puliti Grant Pearse Michael Watt Edward Mitchard Ian McNicol Magnus Bremer Martin Rutzinger Peter Surovy Luke Wallace Markus Hollaus Rasmus AstrupAbstract
No abstract has been registered
Abstract
No abstract has been registered