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Transnational collaboration to save the Caspian seal


The Central Asian Institute for Environmental Research (CAIER), under the leadership of Aselle Tasmagambetova, recently organized a joint scientific expedition to Kazakhstan to study the Caspian seal and the severe ecological situation of the Caspian Sea. Photo: Tommi Nyman

Pollution, illegal hunting, global warming and disease pose a serious threat to the Caspian seal. NIBIO’s genetic experts have now teamed up with the Caspian Seal Research and Rehabilitation Center in Kazakhstan to help save this endangered, red-listed species.

The Caspian seal (Pusa caspica) is a species native to the Caspian Sea which lies in Eastern Europe and Central Asia. For centuries the seal has been hunted, and since the start of the 20th Century, its population has declined from an estimated 1 million seals to just above 70,000. Recent estimations show that the population is currently declining by 3-4% per year.

In 2009, the Caspian seal was listed as endangered by the International Union for Conservation of Nature. In 2018, following an initiative from the Caspian Seal Research and Rehabilitation Center (CSRRC) in Kazakhstan, it was entered into the country’s Red Book.

Despite this, poaching continues in the region, along with the continuous threat to its survival from oil spills and other pollution, diseases, and climate change related issues.

“Oil, industrial and heavy metals, agricultural pesticides, radioactive waste, wastewater, and household waste have all entered the sea and poisoned the seal’s habitat. Not only that, we have estimations that show that up to 70% of female seals may now be barren, unable to produce offspring,” says Ms. Aselle Tasmagambetova, founder of the CSRRC.

According to the Centre’s website, another reason for the seals’ decline is due to illegal fishing nets being put out in which seals are caught.

“Since we opened our seal rehabilitation center in Aktau, Kazakhstan two years ago, we’ve treated around 70 seals. Approximately half of these were caught in illegal nets, so this is definitely an issue which needs addressing,” she says.

Expedition team consisting of scientists and marine experts from USA, Norway, UK, Kazakhstan, Saudi Arabia and France. Photo: Zhanarbek Amankulov

Genetic diversity essential to species’ survival

The CSRRC was established as an effort to save the Caspian Seal, which is regarded as a key indicator for the health of the Caspian Sea upon which the livelihoods of many people depend. The Centre collaborates with similar organisations in the surrounding countries and has recently established contact with the Norwegian Institute of Bioeconomy Research, NIBIO.

Researcher at NIBIO Svanhovd Molecular Centre, Dr. Tommi Nyman, is an expert on genetic variation in populations. Among other things, he has extensive experience in studying an extremely rare Finnish seal species, the Saimaa ringed seal (Pusa hispida saimensis), of which only around 400 individuals remain.

“There are some similarities between the situation of the seals in the Caspian Sea and the seals endemic to Lake Saimaa in Finland. However, whereas the Caspian seal population is declining, we’ve actually seen a slow increase of the Saimaa seals with numbers rising from a mere 150 in the 1980’s to just above 400 now. This is most likely due to new restrictions concerning fishing nets,” he says.

Dr. Nyman et al.’s studies show, however, that the genetic diversity of the Saimaa ringed seals is very low, suggesting significant inbreeding within the population.

“This is unfortunate, as preservation of genetic diversity is essential to the conservation efforts of endangered species. Decreasing population size and increasing isolation, which is the case for the Caspian seal, may result in reduced fitness both at individual and population level,” Dr. Nyman says.

Genetic expert and researcher at NIBIO, Dr. Tommi Nyman holding a Caspian seal pup. Photo: Zhanarek Amankulov

Genetic analyses of seal parasites can reveal inbreeding

To find out if inbreeding may be a threat to the Caspian seal population, Dr. Tommi Nyman recently travelled to Kazakhstan to join a seal expedition led by the CSRRC. The aim was to search the seals for host-specialist seal parasites, namely lice, which only transmit from one seal to the other through close contact, i.e., during mating and nursing.

“Our genetic analyses of lice sampled from individual seals in Lake Saimaa, showed that the seals’ low diversity and distinct spatial genetic structure was reflected in the genetic composition of their lice,” Dr. Nyman says.

“Put more simply, if pairs of lice found on individual seals have the same genetic make-up, this indicates that the lice are inbreeding, which in turn tells us that the seals are doing the same.”

Unfortunately for Dr. Nyman, no parasites were found on the seals they came across during the expedition on the ice-covered Caspian Sea. However, the CSRRC have found and sent several lice samples to Dr. Nyman at Svanhovd’s DNA laboratory for genomic resequencing and other genetic analyses. The analyses will later be broadened to include also other parasites of Caspian seals.

A lot of data was obtained during the expedition in February 2023, among other things test were conducted to identify microparasites and biotoxins in the seals, along with samples of snow coating and water to study eDNA, and seal milk samples for genetic analyses. Photo: Tommi Nyman

Unified transnational policies necessary

Ms. Tasmagambetova at the CSRRC says that NIBIO’s genetic studies on seal parasites can provide a broader understanding of the Caspian seals’ origin, health and life cycle, also for future seal generations.

“Our aim is to gather enough scientific data so that we can build a comprehensive database which provides us with a full overview of population structure, parasites and more among the marine mammals of the Caspian Sea,” she says.

As of today, there are few unified policies in place for saving the seals between the countries surrounding the Caspian Sea.

A number of different tests were taken for further analyses, and sick animals the team came across were provided with vital veterinary assistance. Photo: Tommi Nyman

“Due to the fact that the seals migrate with no regard to borders, it is important that all countries handle them and their situation in a unified and systemic way,” says Ms. Tasmagambetova.

She points out that there is a lot of oil production activity in the Northern part of the Caspian Sea.

“We need to reach an agreement with the surrounding countries to ensure that everyone puts an effort in saving the environment of the Caspian Sea along with its marine inhabitants,” she says.

“Our hope is that the Tehran Convention Process, which serves as an overarching governance framework and lays down systemic mechanisms for environmental protection and sustainable development in the Caspian Sea region, can help in this regard. All our research, analyses and studies can be used to develop targeted transnational policies to reverse the current seal population decline.”

The scientists installed electronic tracking sensors on the seals that received veterinary treatment. The instruments will determine the exact location of the animals, the depth of immersion and establish whether the seal is on ice or in water. Photo: Tommi Nyman


World Wildlife Day 3 March



The UN World Wildlife Day is celebrated every year on March 3rd.

This World Wildlife Day 2023 falls on the 50th Anniversary of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) coming into being. Since its inception, CITES has stood at the junction of trade and conservation. It has sought to build partnerships and reconcile differences between the groups that are guided and governed by its regulations.

Climate change and mass mortality cases

Global warming is an important issue for all marine ecosystems, and the Caspian Sea is no exception. Ms. Aselle Tasmagambetova at the Caspian Seal Research and Rehabilitation Center (CSRRC) in Kazakhstan says that particularly the North side of the sea in the Kazakh region is important, as it makes out the breeding ground for the seals during winter.

“The Caspian seals breed, give birth, nurse and train their pups on ice only. Global warming, also in regard to the already documented water level decline, will thus have a major impact on the seals’ most important habitat,” she says, adding that the CSRRC are currently collaborating with the King Abdullah University of Science and Technology in Saudi Arabia to develop sensors which track the seals’ migration pattern.

“Hopefully, the data gathered from these sensors will provide us with important information on how the seals cope with temperature change, in that they may have to try and find new areas to live in the future,” she says.

In addition to the threat from global warming, there have been several mass mortality cases among the Caspian seals during the past decades. The last one was observed in November 2022, for which the CSRRC requested a full report. A group made up of representatives from scientific organisations and government bodies concluded that the main cause of death for most of the seals was virus-associated acute pneumonia as a result of an outbreak of mixed influenza and morbillivirus infection.

“The report confirmed our suspicions over the past years, in that the accumulation of toxic metals and chemicals in the water, soil and ice may load the seals’ immune systems, making them more vulnerable to viruses.” Ms. Tasmagambetova says.

The Caspian seals breed, give birth, nurse and train their pups on ice only. Global warming can therefore have a serious impact on their livelihood. Photo: Tommi Nyman


Caspian Seal Research and Rehabilitation Center (CSRRC)

The CSRRC was set up in order to protect the Caspian seal, an animal that has been brought to the brink of extinction by illegal and legal hunting and the deterioration of their habitat in the Caspian Sea.

On the 6th August 2019, the Saby Charitable Foundation together with the Central Asian Institute for Ecological Research opened the Caspian Seal Research and Rehabilitation Centre (CSRRC) in Aktau, Kazakhstan, to restore the Caspian Seal population in the Kazakhstani sector of the Caspian Sea. Kazakhstan makes up 33% of the Caspian Sea’s coastline.

The CSRRC uses modern technology to rehabilitate sick and injured seals, and conducts research on the changing environment of the Caspian Sea, in particular how pollution and climate change are impacting seal populations. The Centre also monitors seals for disease.

The CSRRC is the first of its kind in Kazakhstan, equipped with the latest rehabilitative technologies and staffed by seal specialists.

Website: https://caspiansealrrc.com/

Rare Pinniped Conservation Network (RAPCON)

NIBIO and CSRRC are members of RAPCON, a network to foster organization and sustained collaboration among individuals working to conserve rare pinniped populations globally. The inaugural meeting of this network took place at the 2nd World Marine Mammal Science Conference in Barcelona (7th December 2019). The Marine Mammal Commission has facilitated formation of RAPCON and provides leadership and organizational support. The next RAPCON meeting will take place in Hämeenlinna, Finland March 7-9 2023.

Website: https://www.mmc.gov/rapcon/ 

The CAIER/CSRRC expedition ship. Photo: Tommi Nyman



To document


The Saimaa ringed seal (Pusa hispida saimensis) is endemic to Lake Saimaa in Finland. The subspecies is thought to have originated when parts of the ringed seal population of the Baltic region were trapped in lakes emerging due to postglacial bedrock rebound around 9000 years ago. During the 20th century, the population experienced a drastic human-induced bottleneck. Today encompassing a little over 400 seals with extremely low genetic diversity, it is classified as endangered. We sequenced sections of the mitochondrial control region from 60 up to 125-years-old museum specimens of the Saimaa ringed seal. The generated dataset was combined with publicly available sequences. We studied how genetic variation has changed through time in this subspecies and how it is phylogenetically related to other ringed seal populations from the Baltic Sea, Lake Ladoga, North America, Svalbard, and the White Sea. We observed temporal fluctuations in haplotype frequencies and loss of haplotypes accompanied by a recent reduction in female effective population size. In apparent contrast with the traditionally held view of the Baltic origin of the population, the Saimaa ringed seal mtDNA variation also shows affinities to North American ringed seals. Our results suggest that the Saimaa ringed seal has experienced recent genetic drift associated with small population size. The results further suggest that extant Baltic ringed seal is not representative of the ancestral population of the Saimaa ringed seal, which calls for re-evaluation of the deep history of this subspecies.

To document


Host-specialist parasites of endangered large vertebrates are in many cases more endangered than their hosts. In particular, low host population densities and reduced among-host transmission rates are expected to lead to inbreeding within parasite infrapopulations living on single host individuals. Furthermore, spatial population structures of directly-transmitted parasites should be concordant with those of their hosts. Using population genomic approaches, we investigated inbreeding and population structure in a host-specialist seal louse (Echinophthirius horridus) infesting the Saimaa ringed seal (Phoca hispida saimensis), which is endemic to Lake Saimaa in Finland, and is one of the most endangered pinnipeds in the world. We conducted genome resequencing of pairs of lice collected from 18 individual Saimaa ringed seals throughout the Lake Saimaa complex. Our analyses showed high genetic similarity and inbreeding between lice inhabiting the same individual seal host, indicating low among-host transmission rates. Across the lake, genetic differentiation among individual lice was correlated with their geographic distance, and assignment analyses revealed a marked break in the genetic variation of the lice in the middle of the lake, indicating substantial population structure. These findings indicate that movements of Saimaa ringed seals across the main breeding areas of the fragmented Lake Saimaa complex may in fact be more restricted than suggested by previous population-genetic analyses of the seals themselves.